Tachysurus vachellii: 132844600
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Entry
132844600 CDS
T09596
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
tvc
Tachysurus vachellii
Pathway
tvc03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
tvc04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
132844600 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
132844600 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tvc02000
]
132844600 (npc1)
Transporters [BR:
tvc02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
132844600 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
132844600
NCBI-ProteinID:
XP_060724207
LinkDB
All DBs
Position
1:complement(3370294..3391587)
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AA seq
1280 aa
AA seq
DB search
MTLLRITSILGLLGVLILLSETWQVKAQHCIWYGECGNSTLLPSKKYNCNYTGAPKPLPK
EGQDLLQELCPGLAFGDHSVCCDTQQLRTLKSNIQIPLQYLSRCPACFFNFMTLFCELTC
SPRQSEILNATQFSADPVDNSTNVVELSYYISQDFANNMYNACADVQAPSSNVKALSLLC
GRDASLCTPNNWIQYMFDINNGQVPFAIDPVFSGAPPSGMTFMNNHTFGCTESLDDGSAP
CSCQDCSASCGSAPVPPPIPPPWTIFGYDAMCVIMWLSYAAFLLVFVSTLGLAWCFRKRE
ITSEYGPIQDSGEPLSLNKDPAGSSNEVTCCESLGERFENFLRQAFSCWGSFCVRCPVLV
IVMSIVLVVICCLGLRNMSITTDPVDLWSAPQSRARMEKQYFDEHFGPFFRTEQLIITTP
WTNWFTFEGQTGDILFAPILNISLLHQILDLQTAIEHLEADFNGEKVTLKDICLSPLAPY
NNNCTILSVLNYFQNSHEVLDHINRDEFYIYFDYHTHFMYCVSSPIALDDTGHFHDPCMG
TFGGPVFPWLALGGYEGTAYNNATALVITFPVNNYLNDTEKLGRALAWEKEFVTFLKNYS
NPNLTISFNSERSIEDEINRESNSDISTVLISYATMFIYISLALGHIRSFRSLLVDSKIS
LGIAGILIVLSSVACSLGIFSYAGVPLTLIVIEVIPFLVLAVGVDNIFIIVQTFQRDERM
EHEELHQQIGRILGDVAPSIFLSSLSETVAFFLGALSPMPAVRTFSLFAGLAVFIDFLLQ
ISCFVSLLGLDIKRQEKNRLDILCCIKLSDRQEGNNDGILYRFFKKIYAPFILKDWVRPL
VVAVFVGMLSFSIAVTDKVDIGLDQQLSMPDDSFVLHYFGNLTKYLHTGPPVYFVVKDGH
DYSTSEGQNQVCGGVGCNNDSLVQQIYTASLISDYTKISTTPSSWLDDYFDWVKPQSSCC
RYYNSTGAFCNASVVDPSCVHCRPSTPSGKLRPNGTDFMRFLPMFLSDNPNIKCGKGGHA
AYSSAVVLKDNNTKVGATHFMSYHTILKTSADNIDAMKMARELAANISLSMGLENKTQGV
FPYSVFYVFYEQYLTIAHDTALNLSVSLVAIFVVSTVLLGFELWSAVLVSLTIAMILVNM
FGVMWLWGISLNAVSLVNLVMSCGISVEFCSHIVRAFSISTKATRVERAEEALAHMGSSV
FSGITLTKFGGIIVLAFSKSQIFQVFYFRMYLAIVLLGATHGLVFLPVLLSYAGPSVNKA
KVLAARSRFTGTEREYLFAN
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgactcttttgagaataacctccattttagggctgttaggagttctaattttactctcc
gagacgtggcaggtgaaggcacagcactgtatctggtacggagaatgcggcaactcgact
ctcctcccaagtaagaagtataactgtaactacacaggagctcctaaacccctgcctaaa
gaaggacaagacctcttgcaggaactttgcccaggtttggccttcggtgaccacagtgtc
tgctgcgacacacagcaactccgtacactgaagagcaacatccagatccctctacaatac
ctgtccaggtgcccagcatgtttcttcaacttcatgaccctgttctgcgagctgacctgc
agcccccggcagagcgagatcctcaacgccacccagttctcagccgaccccgtcgacaac
agcaccaacgtggtcgagctctcgtactacatcagccaggacttcgctaacaatatgtat
aacgcgtgtgcggacgtccaagctccatccagcaacgtgaaggctcttagtttgctgtgt
ggccgagacgcgagtctttgcacccccaataactggatccaatacatgtttgacatcaac
aacggtcaggttcccttcgccatcgatcccgtcttctcaggtgctccaccctctggcatg
accttcatgaacaaccacacgttcggctgcaccgagtctctagacgacggctcagcaccg
tgctcctgtcaggactgcagcgcttcctgcgggtccgcacccgtccctccgccgatccct
cctccgtggaccatttttggctacgacgccatgtgcgtcatcatgtggctttcctacgcc
gcctttctcctcgtctttgtcagcacgctgggtttagcctggtgcttccggaaaagggaa
atcacgtcggagtacggccccatccaagacagcggcgagcctctttccctgaacaaagac
cctgccggctcatccaatgaggtgacgtgctgcgagtctctaggtgagcgctttgagaat
ttcctacgtcaggccttcagctgctggggctccttctgtgtgcgctgtcctgtgctggtg
atcgtcatgagcatcgtgttggtggtcatctgctgcctgggtttgagaaacatgagcatc
accaccgacccggtggacctgtggtcggccccacaaagccgcgccaggatggagaagcag
tatttcgacgagcacttcggcccgttcttccgcaccgagcagctcatcatcaccacgcca
tggaccaactggttcacgttcgagggtcaaaccggcgacatcctctttgcacccatcctg
aacatatctctgctgcatcagattctggatcttcagaccgccatcgagcaccttgaggcc
gactttaacggagagaaggtgaccctgaaggacatctgcctttctccgctggctccttac
aacaacaactgcaccattctgagcgtgctcaattacttccagaacagccatgaagtcctg
gaccacatcaaccgcgacgaattttatatctactttgattatcacacccacttcatgtac
tgtgtgagttccccgattgccctggatgataccggacatttccacgacccctgtatgggc
acttttggtggtcctgtcttcccttggcttgccctcggaggttacgaaggcacggcgtac
aacaacgccaccgctctagtgatcaccttccctgtgaataactatctcaatgatacagaa
aagctgggcagagctctcgcttgggagaaagagtttgttacctttttaaaaaactacagc
aacccaaacctcacgatctccttcaactcggagcgcagcatagaggacgagatcaatcga
gagagcaacagcgacatctccaccgtcctgatcagctacgccaccatgtttatctacatc
tccctggcgctggggcacatcaggagctttcgcagcctgctggtggactcgaagatttct
ctgggtatcgccggcatcctgatcgtcttaagttcagtcgcatgctctctgggaatcttc
agctacgccggcgttcccctcactctcatcgtcatcgaggtcatcccctttctcgtgctg
gctgtaggagtggataacatcttcatcatcgtgcagacctttcagagagacgagcggatg
gagcatgaggagctgcatcagcagatcggccgtatcctcggagacgtcgctcccagcata
ttcctgtcctctctttctgagactgtcgcttttttcttaggagctctgtccccaatgccg
gccgtcaggacgttctctctgtttgccggcttggccgtctttatcgacttcctgttgcag
atcagctgctttgtctccttgcttggtctggacatcaaaaggcaagagaaaaatcgcctg
gacatcctgtgctgcatcaagctgtctgaccggcaggaaggaaataacgacggcatcctc
tatcgcttctttaagaaaatctacgctccctttatactgaaggattgggtgcgccccctg
gtggttgctgtgtttgtgggaatgctctcgttcagcatagccgtcactgacaaagtagac
atcggactcgaccaacagctgtccatgcctgatgactcgttcgtgttgcactactttggg
aacctgacgaaataccttcataccggacctcctgtctacttcgtagtgaaggacggtcac
gattacagcacctcggagggacagaaccaagtgtgtggcggcgtgggctgcaacaacgac
tcgctcgtgcagcaaatctacacagcatcgctcataagtgactacacgaagataagcacg
accccgtcctcgtggttggacgactacttcgactgggtgaaacctcagtcgtcctgctgc
cgatactacaactctactggagccttttgcaacgcctcagttgtagacccttcctgtgtg
cactgcaggccttcgactcccagtggcaagctgagacctaacggcactgacttcatgagg
ttcctgccaatgttcctgtctgataaccccaacatcaagtgtgggaaaggaggtcatgct
gcctacagcagcgctgtagtgctgaaggacaacaacaccaaagtgggcgccacccatttc
atgagctaccacaccatcctgaagacgtctgcggacaacatcgatgccatgaagatggcc
cgagagctggccgctaacatctcgctgtccatggggctggagaacaagacgcaaggggtg
tttccttacagcgtgttctacgtgttctacgagcagtacctcaccatcgcccacgacacg
gcgctgaacctctccgtctccctggtggccatcttcgtggtcagcaccgtgctgctgggc
tttgagctctggtcggccgtcctcgtctcgctcaccatcgccatgatcctggtcaacatg
ttcggtgtcatgtggctgtggggcatcagcctcaacgccgtgtccctcgttaacctcgtc
atgagctgtggtatatcagtggagttctgcagccatatcgtcagggcgttctccatcagt
actaaagccacacgggtggagagagctgaagaggctctggcacacatgggcagctctgtc
ttcagcggcatcaccttaaccaaatttggtgggatcatcgtcctggctttctccaagtcc
cagatcttccaggtcttctacttccgcatgtatttagccatagtgctgctgggagcgact
cacggcctcgttttcctgccagtgctcctgagttacgcaggtccgtctgttaacaaagct
aaggtcttggcagcacggagcaggttcaccgggacagagcgcgagtatctgtttgctaac
tga
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