Tachysurus vachellii: 132844839
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Entry
132844839 CDS
T09596
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132844839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132844839
03009 Ribosome biogenesis [BR:
tvc03009
]
132844839
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132844839
Spliceosome [BR:
tvc03041
]
Complex A
U1 snRNP components
U1 related factors
132844839
Complex B
132844839
Ribosome biogenesis [BR:
tvc03009
]
Eukaryotic type
Pre-60S particles
Helicases
132844839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132844839
NCBI-ProteinID:
XP_060724653
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All DBs
Position
4:complement(27246499..27255100)
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AA seq
608 aa
AA seq
DB search
MPGYSDRDRGRDRGYGSSAPRFGGGRSGPPPSGKFGNPGDRLRKRHWNLDKLPKFEKNFY
KEHPDVTRRSTQEVEQYRRAKEVTVKGRDCPKPIIKFHEATFPNYVMDVINKQTWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
QRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQANDLISVLREANQAINPKLLQMAEDRG
GRSRGGRGSYKDDRRDRYSSGGRRDFGSYRDREGERGYSSGPKAQNGSYGGYNKTNGSTG
NYSNNSYNSGGNPNAFGNQNFQNQPFQGNQVPAQNGMNHPPFPFNPPQPPQQPPQPMVPY
PMPPAFPQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggaagagacagaggttatggcagcagtgctcct
cgatttggtggaggccgcagtggccctcctccgtccggaaaatttggtaatcccggcgac
agactacgcaaacggcactggaaccttgacaagcttcctaaatttgagaaaaacttctat
aaagagcatcctgatgtcaccaggaggtcaacgcaagaggtagaacagtatcggcgggca
aaagaagtcacagtcaaaggcagagattgcccaaagcctattattaaatttcatgaagcc
accttcccaaattatgtaatggatgtaatcaataagcagacgtggtctgagcccactccc
attcaagctcaagggtggccactcgctctaagcggaaaagacatggtcggcatcgcccag
accggctctggaaaaaccctggcatacctgttaccagccattgtgcacattaaccaccag
cctttcctcgagcacggagatgggccaatttgcctggtgcttgcccccactcgtgagctg
gctcagcaggtgcagcaagttgctgcagagtatggacgagcctctcgcctaaagtccacc
tgcatctacggaggagctcctaaaggaccccagattcgagaccttgagagaggtgttgag
atctgcattgccacacctggtcgtctgatcgacttcctggaggcaggaaagaccaacctg
caacgctgcacttacctggtgctggacgaggctgaccgcatgctggacatgggcttcgaa
ccgcagatccgaaaaattgtagatcagatccgtcctgacaggcagacactgatgtggagc
gccacttggcccaaagaggtgcgtcaactggcagaagatttcctgaaggagtacgttcaa
atcaatgttggagctctgcagctcagtgccaaccacaacatcctgcaaattgttgatgtc
tgtaatgatggtgaaaaggatgacaaactaatccgcttgctggaggagatcatgagtgag
aaggagaataagaccatcatctttgtagagaccaaacgacgatgtgatgaactaacccgg
aggatgaggagagacggatggcctgccatgggaattcatggagataaaagtcagcaggag
cgagactgggtgctgaacgagttcaagtatggtaaagcatgcatcctcatcgcgacagat
gtggcatctcgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctctgaggactatatccaccgaattggccgcacggcccgcagtcagaaaacgggc
acagcctacaccttctttacgcccaacaacatgaaacaggccaacgacctgatctcggtc
ctgcgtgaggccaatcaagccatcaaccccaaactgctccagatggcagaggaccgagga
gggcgttccagaggtggtcggggtagctacaaggatgaccgtcgggaccgctattccagt
gggggtaggagagattttggtagctatagggatagagaaggtgagaggggttacagtagt
ggccccaaagcacagaacggcagttatggcggctacaacaaaaccaacggtagcaccggt
aactacagtaacaacagctacaacagtgggggaaacccaaatgctttcggaaaccagaac
ttccagaaccagccattccaggggaaccaggtgccagcccaaaatggaatgaaccaccct
ccattcccctttaacccccctcaacccccccaacagcctccacagcctatggtgccctac
cccatgcctcctgcttttccccagtag
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