Tachysurus vachellii: 132847407
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Entry
132847407 CDS
T09596
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132847407 (col17a1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132847407
NCBI-ProteinID:
XP_060728651
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All DBs
Position
6:complement(18313045..18333682)
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AA seq
1501 aa
AA seq
DB search
MDFLTRQTEDSGGSPGDRVITETISTSRLTSLPPKGFSGSSSKSMSNSSWGSSFEKNILN
HNSSTNSYLPSSSVTVNSGGSGLDYALLLGDEYTGSSRSGGGRGGSTGIESVSGKDSGLK
SRSSSSGLRRTQGSSSSINHSPILLERKTTLSHSGGYDGSSSANSSPELTRKDYGSSRGR
SQNRESEIRVRLQSASPSTKWTELEDVKKLVKSGRSSSVSPTRSTASSTLPVPRKAKVET
KIIKQGSQTASGQYDTTILDSALPSYTWTSSTLPSNASGTTAFAYQSSTNNMSPGSSLLN
TTSPSSLSVYGFQNNLATPSGTLLTSNTVNTHSGYGVQKNISQSIGSSGVVSTGVSTSTG
TTTHSIKDDMPRKYIILEKENVPSKKETEVLVLSKDSGKQFSSTLYGKGGSVSDVSLKKE
AVASSYAETAPAKLSSSSYYGSSSAPTKDKATYAEIYKEKNGGKGGGSCFDCGPSCCSWW
KWLLGLLLSLLLLLGLLFGLIALAEDVRKLKERVDALQNLVQGSRAKTNRLTGKNIHNQR
SAYMDMENDLATSDNTLNLGAATSSDSASLRTIQNLLQSELQSETFRASLASTLKGERGL
AGPKGDTGAQGPKGDSGFPGIPGSPGAIGHPGPEGPKGQKGSAGEHGGEGPPGIRGRDGL
PGLRGEPGPASAGEKGERGSPGEPGARGFPGSPGPPGPKGSAGLNGLMGAAGEPGSQGFR
GEAGPAGPKGDRGPQGQQGIKGDQGEKGDPGVPGFPGPTGKPGTNGEKGARGSTGTSGAD
GEKGQRGDQGPIGMPGIRGPAGPPGDAGSQGPPGLQGPPGIAGLPGQPGVKGENGEPGRV
INAAGYSSVAIPGPPGPAGPPGPAGPPGLSGPVGPAGIPGQAGPKGEKGDQGEAGITVER
TETSVRGERTFGTLDATQVIQGPPGPPGPPGPPGAPGYGTPGLRGEKGVKGEQGSFVPNS
GTFFAGPPGPPGPSGPKGDTGPQGPRGYQGDPGQPGLPGRPGGSESRNSGVQGPPGPPGP
QGLPGQQGPKGDSGIPGAPGIPGTSRASGSVGVSGQPGPPGPPGPPGSPGHSISTADYRR
YIIDFMQSDSMRQHLSSIQGPPGPPGASVSVEDVASRVIAYIQRSGLTGSPGPPGPAGSI
SVSDIIALLQRDDVRRYVTGPPGPPGPSGSINLGNFDTQEVANYVLRLMSDRGLTSRSGL
PGPPGPPGPPGQPGSTYSDITALIERSGLRAGLQGPPGPPGRQGLPGPVGPPGSSSSGYR
LEDIQAYIQNSGLRGPQGPPGPPGPQGPGGDSRTFDRASQRAHIRAELQEYLSSDAMRRY
SSGLPGPPGPPGPRGEKGDRGESGYSAGGGYYYSPDRNGVRLAETDYSNVAQKVTDYIRS
QGLLQEMNDNYWQSHFLGIQGPPGPAGPPGQPGYSRVFSTYGNITADLMDFFRTHGTIPG
PPGRQGHKGERGYPGPKGEKGEMGRQGTPGVQGPRGPEGPRGQKGEKGEIQIGRRRRSLG
V
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atggatttcttaacaaggcaaaccgaagattcaggaggaagtccaggagacagagttata
actgaaaccatatcaacatccagactcacatcattaccaccaaagggcttcagtggatct
agcagtaagagtatgagtaacagctcttggggaagcagctttgagaagaatattctaaac
cacaatagtagcaccaattcctacttgccttcctcctcagttactgtaaattcaggggga
tcagggttagactatgccctgttacttggagatgaatacactgggagcagcaggagtgga
ggaggacgcggaggcagtacaggaattgaaagtgtttctggaaaagactctgggttgaag
agcaggtccagctcctcgggcttgagaaggacacaaggttcatcctcctctattaaccac
tctcccattttattggagagaaaaactaccctcagtcactcaggaggttatgatggaagt
tcaagcgccaattcatcaccagagctcacgaggaaggactatggctcatctagaggaaga
tcccaaaacagagagagtgagatcagggtcagattacagagtgcatctccatcaaccaaa
tggacagagctggaagatgtgaagaaattagtgaagagtggacgatcgtcaagtgtcagc
cccactcgctccacagcctcgtccactctgcctgttccacgcaaagctaaagtcgagact
aaaatcatcaaacaaggcagtcagactgcctcagggcagtatgacaccactattctggac
tcagcacttccatcgtatacatggaccagctccacactgccctctaatgcttctggcaca
actgcctttgcttatcaaagcagcaccaataacatgtcaccgggatcttctcttttaaac
accacttcgccctcttcgctatcagtgtacggcttccagaataatcttgccacaccatct
ggtacacttctcacatcgaatacagttaacacacattcaggatacggtgtgcagaaaaac
atttctcagagtattggtagctctggtgttgtcagtacaggagtttctacttctacaggc
acaactacacactccattaaagatgacatgccacgaaaatatattatacttgagaaggag
aatgttccttcaaaaaaggagacagaagtgcttgttctgtcaaaggacagcgggaagcag
ttctccagcacattgtatggaaaaggagggtctgtttcggacgtctcactgaagaaggag
gctgtagcaagcagctacgctgagacagctcctgccaaattaagttcaagctcctactat
ggatcttcatcagcccctaccaaagataaggctacatatgcagagatctataaggagaag
aatggtggaaaaggaggaggcagttgctttgactgtggtccgagctgctgctcttggtgg
aagtggctgcttggactgctgcttagtcttctgctgctcctcggccttctttttggactt
atcgctctcgccgaggatgtgagaaagctgaaagagcgtgtggatgctcttcagaacctg
gttcaaggcagcagggctaaaactaatcgccttactggaaagaacattcacaatcaaagg
tcagcatatatggacatggaaaacgatctggctacttctgataacacattgaacttggga
gctgctacttcctcagactctgcatccctgagaacaatacaaaaccttctgcaaagcgag
ctgcagtctgagactttccgagctagccttgcttccacactcaaaggagaaagaggactg
gcagggcctaaaggtgacactggagctcaaggacccaaaggggatagtggtttcccaggt
ataccaggttctccaggagcaataggacacccaggacctgaaggaccaaaaggacaaaag
ggaagtgcaggcgagcatggtggagaggggccaccaggaatcaggggccgagatggatta
ccagggctgcgaggagagccaggacctgcaagtgctggagaaaagggtgaaagaggctct
cctggagaaccaggcgctcgtggctttccaggttcacctggtccaccgggtccaaaaggt
tcagcaggtcttaatgggttgatgggtgctgcaggtgaacctggttcacaaggtttcaga
ggagaagcaggacctgcaggacctaaaggggacagaggacctcaaggacaacaaggaatt
aagggtgatcaaggtgaaaagggagatcctggtgtgccaggtttcccagggcctacagga
aaaccaggaactaatggtgagaaaggagccagaggatcgacagggacttcaggtgcagat
ggtgaaaagggccaaagaggtgaccaaggtccaattgggatgccaggaatcagaggccca
gctggaccacctggtgatgctggatctcaaggaccaccaggacttcaaggacctccaggc
attgcaggacttcctggacagcctggagttaaaggtgaaaatggagaacctggcagagtt
atcaatgcagcaggctacagctctgtggcaattccaggacctccagggccagctggacca
cctggacctgctggacctccagggctgtcaggccctgttggtcctgctggaattcctgga
caagcaggtcctaaaggtgaaaagggtgatcaaggagaggctgggatcacagtggaaaga
acagagacctcagttagaggagaaagaacctttggtacattagatgctactcaagttatt
cagggaccacctggaccacctggtccccctggacctcctggagctccaggatatggcaca
cctggcctgagaggagagaaaggagtgaagggagagcaagggagttttgtgcccaactca
ggaacattttttgctgggccaccaggaccacctggaccttcaggtcctaaaggagacaca
ggacctcaaggacctagaggatatcaaggtgatcccgggcagcctggcctacctggaagg
ccagggggatcagaaagccgaaactctggagttcaaggaccgcctgggccacctggacct
caagggctgccaggtcaacagggccctaaaggggacagtggcattccaggtgccccaggg
atcccaggaacatcaagagcatccggttctgtcggggtttcagggcagcctgggccccca
ggacctcctggaccacctggatctcctggacactccatatctacagcagattatcgacgt
tacattattgacttcatgcagagtgacagcatgaggcagcatttgtctagtatccagggc
ccacctggtcctccaggggcctccgtgtctgttgaggatgtggcatctcgggttattgca
tacattcagcgctctggattgactggatcccctggtcctccaggtcctgctggctctata
tctgttagtgatatcattgcattattacaaagagatgatgttaggcggtatgtaactggc
cctccaggaccacctggcccttcaggaagtataaatctaggcaactttgacacacaggaa
gtggcaaactacgttctgagattaatgagtgatcgagggttgacaagtagatctggactt
cctggtcctcctggaccacctggtccacctggccagccagggtccacctacagtgacatc
actgctttgattgagaggtcaggtcttagagcaggtcttcaaggtccccctggtcctcca
ggaagacaaggcctacctggtccagttggtccccccggctcttcaagttcaggatacaga
cttgaagacatccaggcctacatacaaaattctggcttacggggtccccagggtccaccc
ggccccccgggacctcaagggcccggaggagactcaaggacatttgacagagccagtcag
agagcacacattcgtgctgagcttcaggagtatctcagtagtgatgctatgcggcggtac
agctcaggtcttcctggacctcctggtcctccaggaccccgtggtgaaaaaggggaccgt
ggtgaatctgggtacagtgcaggtggaggctactactattctcctgaccgtaatggagtc
aggttggctgaaacagactactccaatgttgctcagaaagtcactgactacattcgaagc
cagggtctactgcaggaaatgaatgacaattattggcaatctcatttcctgggaattcaa
ggtcctcctggtcctgctggtccacctggtcagcctggatacagccgtgttttttctacc
tatggaaatatcactgcagatctcatggatttctttagaacacacggtactattcccggt
ccacctggcaggcaaggacataagggagaaagaggataccctggacccaaaggagaaaaa
ggggagatgggaagacaaggaacacctggtgttcagggaccaagaggtccagaggggcca
aggggtcaaaagggtgagaaaggtgaaatccagattggtcgccgcagaaggagtcttggt
gtgtaa
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