Tachysurus vachellii: 132847952
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Entry
132847952 CDS
T09596
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132847952
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132847952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
CdrL_M
Motif
Other DBs
NCBI-GeneID:
132847952
NCBI-ProteinID:
XP_060729439
LinkDB
All DBs
Position
7:complement(12289953..12424352)
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AA seq
669 aa
AA seq
DB search
MKASEATNPPRCAAKMERDSGLGGKQHYLRTITGAIPFVFSVVSVAFCILLGIQTSDIKN
RMLDLESGNGEHILHPFAEVSIDEFNSMVQERVDEVLSQRSYEHFARARTAREVPSDCNC
PPGPPGKRGRRGHNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGAPGLPGDAGTPGELGPMGPEGPPG
LKGSTGSPGVPGIDGLKGDLGMTGLDGIPGAKGDKGDQGEKGDMGEEGPKGDVGEKGDSG
SSAAGIKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGD
PGPPGKGERGETGPTGPKGAEGEPGTPGLKGSKGDTGDKGDVGLKGPTGPAGEKGDQGTT
EIIDYNGNIREALQKITTITVTGPPGPPGPIGPQGIKGAQGPPGLPGLDGERGHKGSKGD
MGMPGMSGDKGSVGLPGLPGINGQKGEKGDNGLPGPQGPSIIGPPGALGPHGPPGPMGPH
GFPGQKGEAGLPGLKGARGEPGPKGDRGPLGLPGASGLDGKPGIRGTDGPVGAPGPAGPK
GDRGEKGVTGEPGPRGPYGLPGAAGTPGLDGFRGFKGEKGEPGQPGLDGLDAPCQLGPDG
LPMPGCWQK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttcagaagccacaaatcctcccaggtgcgctgcgaaaatggagagagactca
ggcttgggagggaagcagcattatctccgaaccatcaccggtgcaatcccgtttgttttc
tccgtcgtgtctgtcgccttttgcattctcctggggattcaaaccagtgacataaagaac
agaatgctcgatttagaaagcggcaatggagagcacattttacacccgtttgctgaggtt
tccatagacgagtttaactcaatggtacaggagagagtggacgaggtcctgtcacagcgc
tcctatgaacattttgcacgcgcaaggactgcacgtgaagtcccatctgactgcaactgc
ccaccaggcccaccgggaaagcgaggaagaagaggacacaacggagaacctggaccccct
ggtccaccaggtccgaaaggtgagaagggagatcaaggagaccagggaccgcggatggtc
ttccctaagatcaatcatggctttctttctgctgatcagcaactcattaaacgtcgactc
attaagggtgatcagggtcaagcaggccctccaggacctcctggacctccaggtcctcct
ggtcccagaggacccccaggagacacagggaaggatggccccaggggagctcctgggcta
ccaggtgatgcaggaactccaggagagctgggccctatgggaccagagggccctccagga
ctcaagggttccactgggtcacctggcgttccgggtattgatggattgaagggggattta
ggtatgaccggattagatggaatccctggtgccaagggtgacaaaggagaccaaggtgaa
aagggtgacatgggagaagaggggccaaaaggtgatgttggtgagaagggtgattcaggg
tcttctgcggctggcattaagggagaaccaggtgaacctggacgaagcgggctaaaggga
gaaccaggacttccagggctgcctggacttcccggaataaagggtgaacctggatttctc
ggcccacagggtgagccaggtttgccaggactacctggaaccaagggagaacgaggagat
ccgggacctcctggaaagggtgaacgtggtgagacaggcccaacaggaccaaagggggcg
gaaggggagccaggaacaccaggcctcaaaggatctaagggggacactggagacaaagga
gatgttggacttaaaggccccacaggtccagctggagagaaaggtgatcagggcacaact
gaaataattgactacaatggaaacatccgagaagcgcttcagaagataaccactattaca
gtgacgggtccccctgggcctcctggaccaattggaccacagggcattaagggtgctcaa
ggtcctccaggtcttccagggcttgatggagagaggggtcacaagggttcaaaaggagac
atgggaatgccaggaatgtctggcgataagggatctgtgggtctgcccggtctacccggt
atcaatggtcaaaaaggagaaaaaggtgataatggcttgcctggacctcaaggaccatct
atcataggacctcctggggcacttggtccacatggtccacctggtccaatgggccctcat
ggattccctggacaaaagggggaagcaggtttgcctggtttaaaaggagcacgcggggag
cccgggcccaagggtgaccgtggacccctgggcctccctggagcatctggcttggatggc
aagccaggaataaggggtacagatggcccagttggtgctcctggtcctgctggtcctaaa
ggagatagaggtgaaaagggggttacaggtgaacctggaccaagaggaccatatggattg
cctggtgccgctgggacacctggcttggatggtttccggggctttaagggtgaaaagggc
gagccaggccaacctggtctggatgggctggatgccccgtgccaattggggccagacgga
ttaccaatgcctggttgctggcaaaagtga
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