Tachysurus vachellii: 132848319
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Entry
132848319 CDS
T09596
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
tvc
Tachysurus vachellii
Pathway
tvc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132848319 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132848319 (smg7)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132848319 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
132848319 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
132848319
NCBI-ProteinID:
XP_060729903
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All DBs
Position
7:4240163..4255953
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLCGQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQCNSSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLEKLGSLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDFSNDTDDQSFSSDEQLSWIQLLGLFMSFLGVMCSRALLNKNQEEIMGECPL
PAIKVSLDWLRLRSGVFTESAVDHRQYIWPWLVSILNSFQPKEEDVSNSSATPLPEEFEL
QGFLALRPALRLLDFSKGHQGIAVGRESFIVHARHQRLISLGKWVADNHPGLIQCRISDG
LLLFFTEIPELAVEEPQEKEPSVLQESSNGEQNPNDGSSGLKSVLSMGKSQSSGLDSSER
PVVTFKENIKPRDQSREQSRNQQHRDGGKERAGFGKGNGLPLKNEQKKDGKRKSEVKKNS
HEKALDAGKQVKTQAEMRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFP
PPAYVIPPPVAFSMNPGFTFPTGVSVPTSFLQPTSHPQSPNQVQSGKPSHIPYSQQRPSG
PGSLTQGPPQPQAPPQPQQPQPAPPQPSKQALQQSVQLQVQQQQQSPTKQTSQLGKSPPH
HTGMPQSYMPVSEQAGQMWSQHQAPSSMSKMPMSVKQPFFMPAQDHMKLFEHPIPPTMSL
QPPQPSMDKKMNFQEVKMPDFFWDPPYRMTENRGSLADRMGKHQPGVFCPEQENTPRAPS
YEDNKSSPLLPPDLLKTLADLEEEEELVFSKPHDFYQALAGPLNSAPGRNMFLSSQSRLD
SGSEVMGQSSLLHRSVFPIQENYQNNSIFSEAYGKNIASTPKPDVPMMHQEHSLYSLFEG
TPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHGALPFSNFGPIGTPDSRDRRTA
DRWKPEKTGVSGFGLDYLPAGSSAPEPNSWHQSAPTNSWAAQDMPMDDSSTVLLDSFKSI
WSSSMMPPGPSALEQLLMQQKQKQQRGHGTMNPPH
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgtggccaatatttgcgccaggcagaggccctgaaggctgacatgacagat
tcgaagcttggcgctgcagaggtctggacgtcacggcaggctcttcaggacctgtaccag
aaaatgctggtgacggacctggagtatgctctggacaagaaagtcgaacaagacctctgg
aaccatgcttttaagaatcagataacaacactacagagtcaggctaaaaacagagccaac
cccaaccgaagtgaagtacaggcaaatctctctctctttctcgaggcagctagtggattc
tacacacagttgttgcaggagctatgcacggtgttcaacgtggacttaccgtgtcgggtg
aagtcatctcagctcggcataatcagcaataaacagtgtaactccagcgcgattgtaaag
ccacagcccagctcctgctcttacatctgccagcactgtctcgtccacctgggggacatt
gcacgatatcgcaaccagacaagccaggcagaatcctattacagacacgcagctcagctc
gttccatcaaatggtcaaccgtacaatcagctggctatcctggcttcctctaaaggagac
cacctcacgacgatcttctactactgtagaagcattgcagtcaaattcccctttccagca
gcttccaccaacttacagaaagcgctatctaaggctctcgagagccgcgacgaggtcaaa
acgaaatggagcgtgtccgatttcatcaaggccttcatcaaattccacggacatgtttac
ctcagcaaaagcctggagaaactcggttcactgagggagaagctggaagagcagtttcag
cgactgattctccagaaagcattcagctctcagcagctcgtccacataaccgttattaac
ctgttcgagctgcaccacctccgagacttcagcaacgacactgacgaccaaagcttcagc
tcagacgaacagcttagttggatccagcttctcggccttttcatgtctttcctgggtgtg
atgtgcagccgagccttactgaacaagaaccaggaggagatcatgggcgagtgccctctg
ccagctatcaaggtgtccctggattggctaaggctgcggtcaggcgtgtttaccgagagc
gctgttgatcacagacaatacatttggccatggctggtgtccatacttaacagcttccag
cccaaggaggaggatgtgtcaaattcatcagctactccactcccggaagagtttgagctc
caaggctttttggctttgaggccggcattgaggttgctagacttttccaaaggacaccag
ggcattgcagttggcagagagagcttcatagttcatgcccgtcatcagaggctcatcagt
ttgggcaagtgggtggcagacaaccaccctggcctaatccagtgccgcatcagtgatggt
ttactcctcttcttcaccgaaatccctgagctggcggtggaagagccgcaggagaaggaa
ccttctgtgttgcaggaatcatcgaacggtgagcagaatcctaacgatggctcttctggc
ctcaaatcagtactttccatggggaagagccagagcagcggtctggacagcagcgagagg
cctgtagtcactttcaaggagaacatcaaacctcgcgatcaaagccgtgagcagagccgt
aaccagcagcacagggacggagggaaggagcgagcaggctttggcaagggcaacggattg
ccactgaaaaatgaacagaagaaggatggcaagaggaagagtgaagttaaaaagaacagt
cacgagaaagcattggatgcagggaagcaggtgaaaactcaggcagaaatgaggaagact
ccagtgtccgaggcaaggaaaactcctgtcacgcagacgcagacaacttgctcttcccag
ttcattcccatacaccacccaggagcgtttcctcctctccccagtaggccaggttttcct
ccgcctgcatatgtgatcccaccccctgtggcattttctatgaaccctggcttcaccttc
ccaacaggtgtgtctgtccccacctccttcctgcagcctacctcccatcctcagtctccc
aatcaggtgcaatctggaaagccctcacacattccctatagccagcagaggccctctggt
cctgggtctctcactcaggggcctcctcaacctcaagccccacctcagccccagcaacca
cagccagctcctccacagccttccaaacaagccctacagcagagtgtgcagcttcaggtg
cagcagcagcaacagtcacccaccaagcagacctctcagctgggcaagagtccacctcac
cacaccggcatgccgcagtcatacatgccagtgtccgagcaggctggccaaatgtggagc
caacaccaggccccgtcctccatgtccaagatgcctatgtccgtcaaacaaccattcttt
atgcctgcacaggaccacatgaagctctttgagcaccccatacccccaactatgtccctg
cagcccccccagcctagcatggacaagaaaatgaatttccaggaagtgaagatgccggat
tttttctgggatccaccataccgtatgactgagaacaggggcagcttggcagacaggatg
ggaaaacaccagcctggagtcttttgccccgagcaggagaacacacccagagctccatct
tatgaggacaacaagagctctcctcttcttcctccagacctgttaaaaactctggcagac
ttggaggaggaggaggagttggtcttttctaagcctcatgatttctaccaggccttggcc
ggccctcttaattctgctcctggaagaaacatgtttttgtcgagccagtccaggctggac
agtggatcagaggtaatgggacagtcctctcttctacaccgctccgtctttcccattcag
gagaactaccaaaacaacagcatattcagcgaggcatatggtaaaaacatagcgagcaca
ccaaagcctgatgtacccatgatgcaccaggaacattctctttactcactgtttgaagga
actccatggtcaccctctcttcctgccagctcagatcactcaaccccagccagccaatcc
cctcactcgtccaacccgagcagtctgccatcgtcgcctcccactcacagccacggtgct
ctgcccttttccaattttggccccattggcacaccagacagccgtgaccgcagaacagct
gaccgctggaagcctgaaaagactggcgtaagtggctttgggctagattacttgcctgct
ggatcatctgccccagaaccaaacagctggcaccagagtgccccaaccaatagctgggca
gcccaggatatgcccatggatgactcatccactgtcttactcgacagcttcaagtctatc
tggtcgagctcaatgatgccaccaggcccttctgctttggagcagctcctcatgcagcaa
aagcagaagcagcagcgtggccacggcaccatgaatccgccgcactga
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