Tachysurus vachellii: 132848729
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Entry
132848729 CDS
T09596
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04382
Cornified envelope formation
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
tvc04518
Integrin signaling
tvc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132848729 (col4a5)
04518 Integrin signaling
132848729 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132848729 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132848729 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132848729 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tvc04147
]
132848729 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132848729 (col4a5)
Exosome [BR:
tvc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132848729 (col4a5)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132848729 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132848729
NCBI-ProteinID:
XP_060730670
LinkDB
All DBs
Position
7:17659584..17704512
Genome browser
AA seq
1683 aa
AA seq
DB search
MNQKLKSLQKFAVLLFISLSIGVQQSESAVCHGCGTGSKCDCTGVKGVRGDRGFPGQSGH
PGLPGFPGPEGPIGPRGEKGDDGPPGPSGPKGIRGPPGLPGFAGTPGVPGLPGLDGPPGP
KGIAGCNGTKGDRGLPGSPGFPGIDGAPGLRGEAGLKAKPGEVIISETLGTSGGTGILGL
PGPKGEPGRPGLQGPSGPQGPRGYDGPPGPPGPQGPKGNMGLNFQGPKGEKGETGLQGPP
GPPGQVDQLIGETDGVILRGEKGDRGPPGPNGYPGSPGPPGPYGGPKGEKGEPGEFGKRG
KPGKDGDPGPPGLQGVPGDPGVPGLPGGIGERGDKGERGLPGPPGVVSPSTLNQVGPKGD
PGLSGNPGRKGEPGISGVPGPPGQPGRAGIGVQGPPGPPGYPGERGQKGDQGSPGASLPG
SPGRPGPQGFQGLPGPPGPPGISTGGENCLPGPTGLPGLNGDPGYPGETGQKGEKGDTCV
NCFSSGNLIPGPQGPPGPPGPPGSPGFPGYKGDRGSPGGPGSMGPPGLPGLQGLSGAPGE
KGDPGEAVSFDGMKGDKGDTGFPGPPGLPGRDGAPGRDGSPGLPGPKGAPGSLLLKGERG
PAGEPGPSGSPGDRGLPGPPGFGPQGPPGEKGFQGVSGRQGPPGPPGQKGESGLALSQKG
EPGPRGTDGEPGRPGNPGDPGQPGSPGFPGLSGQKGEPGIPGIGLPGPPGPKGFPGIAGS
PGSPGRPGPPGVDGLPGVSGPRGPKGEPGFGIPGPPGPPGLPGSKGFQGPKGDAGFPGNP
GAPGRPGIDGRPGPKGDFGPPGSLGAPGPQGPPGFGLPGLPGPAGPPGPMGNPGSPGLNG
EKGDPGSPGLDIPGLPGDQGRPGLTGPPGPPGPSGIPGNPGQDGLPGLPGQKGEMGVMGT
PGPSGNPGSPGVPGFPGPKGDNGQSGLPGTQGSQGLKGNKGDQGPRGPAGLSHPGSSEKG
TKGDPGSQGFSGTPGAKGIPGLPGDPGIPGQDGRPGPPGPPGPKGDPGFPGTSGLPGSLG
PKGSMGEMGLPGPSGIKGIPGQPGRPGQPGSPGTPGFPGQKGDPGTPGFGQPGAPGAKGE
PGSSGAPGATGPKGQQGPSGSPGLPGNPGPKGDPGLPGFQGAPGAIGPKGLDGVPGPPGL
AGSPGRPGTPGPSGLPGVPGDKGQAGRDGIPGSAGLKGEPGVPGYGIPGPSGIPGMPGQK
GDPGLPGQPGSPGYPGTKGDIGSPGATGSPGLQGPPGPRGLSIPGPKGIQGPPGPPGRVG
PPGPEGSRGPPGSGGVKGEKGYPGNPGSPGIPGQKGNTGPPGSMGPPGAPGSVGLKGDVG
LPGVTGYSGPKGHPGSPGGPGLPGDPGEPGHPGIPGNPGQAPAPIVVKGAQGLPGPPGPP
GSRGLPGEAGLEGRPGQPGSPGDPGPDGPPGFSGPPGGKGDSGPSGQPGQRGSPGSPGPD
GIPGPPGPPGLSSAAHGFLITRHSQTTDVPQCPPGTSVIYDGYSLLYVQGNERAHGQDLG
TAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGENIKPYISRC
TVCEAPAMVIAVHSQTIQLPLCPQFWETLWIGYSFMMHTSAGAEGSGQALASPGSCLEEF
RSSPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLQTRVSRCVVCMKR
TLT
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaagttaaagagtctgcagaagttcgcggtgcttctcttcatatctctgtcc
ataggggttcagcagtccgagtcggcggtatgtcatggttgtgggactggatcaaagtgt
gactgcactggagtgaaaggagtgaggggtgatagaggtttcccaggtcaatcaggtcat
ccaggtttaccaggatttcctggaccagaagggccaattggacctcgtggagagaagggt
gatgatggacctccaggaccatctggacctaaaggaataagaggacctcctggacttcct
ggatttgcagggacaccaggagttccaggtcttccaggattggatgggcctcctggtcca
aaaggaatcgcaggctgtaatggaacaaagggtgacagaggattaccaggaagtccaggt
ttccctggtatagacggtgcaccaggactacgtggtgaggctggactgaaggcaaaacct
ggtgaggtgatcatttcagaaacactgggaacatcaggaggcacaggaatcttgggtctg
ccaggacctaaaggagagccaggccggcccgggttgcaaggtcctagcggtcctcagggt
ccaagaggttacgatgggcctccaggtcctcctggtcctcaagggccaaagggaaatatg
ggtctgaacttccaagggccaaaaggagagaagggtgaaactggcttacaggggcctcct
gggcctccagggcaagtcgaccagttaataggtgaaacagatggagtgattcttcgagga
gagaagggtgaccgtggacctcctggaccaaatggatatcctggctctcctggaccacct
ggcccatatggtggtccaaaaggagagaagggagagccaggagaatttggaaagaggggt
aaacctggtaaagatggggatcctgggcctcctggacttcagggtgtaccaggagaccct
ggtgtacctggacttccaggaggaattggagaaagaggggacaaaggtgagcgaggatta
cctggacctccaggcgtggtgtcaccctcaaccctgaaccaagtaggacctaaaggagat
cctgggctttcaggaaaccctggaaggaaaggagagccggggatatctggggtcccagga
ccaccaggtcagccaggtcgtgcaggaattggagtgcaaggtccacctggcccccctggt
tatccaggagagagaggacaaaagggcgatcaaggatctccgggagcttctcttccaggt
tctcctggcagacctggaccgcaaggttttcaaggacttccaggacctccaggacctcca
ggaatatccactggtggtgaaaactgtctcccaggacctactggtcttccaggcctgaat
ggggaccctggttatccaggggagacaggccagaaaggtgaaaagggggatacatgtgtg
aattgtttctcaagtggcaacctcattcctggaccgcagggcccacctggacctccagga
cccccaggcagtcctggattccctggttataaaggagacaggggatccccaggcggccct
ggttccatggggccaccaggtttaccaggattgcaaggtttatctggagcaccaggagag
aagggtgaccctggtgaagcagtttcatttgatggtatgaagggagacaagggagacaca
ggattccctggccctccaggtctgcctgggcgggatggagcacctggtcgagatggatct
cctggattgcctggtcccaagggtgcacctggttccttattgcttaaaggtgaacgtggc
ccggctggagagcctggcccttcaggttctcctggagacagggggcttcctggtccccct
ggatttggcccacagggacctcctggagagaaaggtttccagggcgtgtcaggaaggcaa
ggacctcctggacctccaggtcagaaaggtgaatcaggtctggctctctctcagaaagga
gaacctggacccagaggaactgatggagaaccaggtcgaccaggaaatccaggtgaccct
ggccaacctggttcccctggttttccaggattatctggccaaaaaggagaacctggtatc
ccaggcataggtttgccaggcccaccaggtcctaaaggattcccaggtattgctggaagt
ccaggcagccctggcagacctggacctccaggtgtggatggactacctggtgtatcagga
ccgcgtggtcctaagggcgaacctggttttggtattcctggaccccctgggcccccaggt
ttgcctggcagtaagggttttcaagggcctaaaggtgatgccggattccctggaaatcca
ggtgcacctggccgacctggtatagacggtcgtccaggccctaaaggtgattttggtcct
cctggttctttgggtgcacctggccctcaaggcccccctggttttggactacctggactg
cctggaccagcaggaccccctggacctatgggcaatcctggttctcctggtttgaatggt
gagaaaggagaccctggttccccaggacttgatattccaggcttgcctggtgaccagggt
agacccggattaactggacctcctggtcctcctggcccttctgggatccctggaaaccct
ggccaagatggactacctggattaccaggacaaaagggagaaatgggtgtgatgggtact
ccaggaccttctggtaatcctggcagcccaggtgttccaggatttcctggaccaaaaggt
gataatggtcagtcaggattgccaggaacccaaggaagtcaaggattaaagggaaataaa
ggtgaccaaggtccaagaggcccggctggtttaagccatcctggtagctcagaaaaagga
acgaaaggagacccaggatctcaaggatttagtggcactccaggagcaaaaggtattcct
ggccttccaggagacccaggtattcctggacaggatgggcgtcctgggccacctggaccc
ccaggtcccaagggagatcccggatttccaggaacatcaggtctccccggttctctaggg
ccaaagggtagcatgggcgagatgggattgcctggcccttctggaattaaaggaattcca
ggtcaacctgggcgccctggacagcctggctctccaggaacaccaggatttccaggacag
aaaggagaccctggaacaccaggatttgggcaaccaggagctccaggagccaagggtgaa
cctgggtcttctggtgctcctggagctacagggccaaaaggtcaacaagggccctcagga
agtccaggattgcctgggaatcctggtccaaagggtgatcctggcctcccaggattccaa
ggtgcacctggtgccattggccctaagggtctggatggagtcccaggcccccctggtcta
gcaggatcacctggaaggcccggaacccctggtccatctggtctgccaggtgtacccgga
gacaagggtcaagctggtcgtgatggtattcctggatcagcaggattgaaaggagagcca
ggtgtaccaggttatgggatcccaggtccttcaggtattcctgggatgccaggtcaaaaa
ggtgaccctggtctccctggtcagcctggcagccctggctaccctggaacaaagggcgat
ataggatcccctggtgcaacaggtagccctggtctccaagggccccctggtcctcggggt
ctgtcgattcccgggcctaaaggcatccagggtcctcctggcccaccaggaagagtaggt
cctcctggcccagagggtagccgaggaccaccaggttctggaggagtgaagggtgagaaa
ggctaccctggaaaccccggatcgcctggtatacctggacagaaaggaaataccggacca
ccaggttcgatgggccctcctggagctcctggaagtgtcgggcttaaaggagatgtcggt
cttccgggcgttacaggatattcaggacctaagggacatcctggtagtcctgggggtcct
ggcctacccggggatcctggtgaacctggtcatccaggtattcctggtaatccaggtcaa
gcgccggcccctattgtggtaaaaggtgcacagggtctccctggtcctccaggacctcca
ggatcccgagggctcccaggagaggcaggactggaggggcgtccaggtcagcctggtagt
cctggtgatccaggccctgatggacctccaggattcagtggtccacctggaggaaaagga
gattcgggaccatctggacagccgggtcaacggggttcacctggctcacctggtccagat
gggattccaggtcctccaggacctccaggtctgtcatcagcagctcatggcttcctgatt
acgcgtcacagtcagacgacagatgtgcctcaatgcccacctggcacctctgtcatctac
gatggctattctctgctttacgtacaaggcaatgagagggcgcatggccaggacctgggt
acggctggaagttgtctacgtcgtttcagcaccatgcctttcatgttctgcaacatcaac
aacgtgtgcaacttcgcttcccgtaatgactactcctattggttgtctactcctgaaccc
atgcccatgagcatggctcctatccaaggagaaaacattaaaccctacatcagcagatgt
actgtatgtgaagccccagctatggtgatagcagtgcacagtcagaccatccaactgcca
ttatgtccacagttctgggagacactgtggatcggctattccttcatgatgcacactagt
gcaggtgctgagggctccggtcaggctttggcctcgcctggctcctgtctggaggagttt
cgctcatctcctttcatcgagtgccatggccgtggaacctgcaactactatggcaactct
tacagcttctggctggccacagtcgaacagtctgaaatgttcaggaagccacagtctgag
acgctgaaagcaggcaatctccagacccgcgtgagccgctgtgttgtgtgtatgaagaga
acgttaacatag
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integrated database retrieval system
