Tachysurus vachellii: 132850011
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Entry
132850011 CDS
T09596
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132850011 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132850011 (sf3b1)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132850011 (sf3b1)
Spliceosome [BR:
tvc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132850011 (sf3b1)
Complex B
132850011 (sf3b1)
Complex C
U2 SnRNP specific factors
132850011 (sf3b1)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
132850011 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
132850011
NCBI-ProteinID:
XP_060732061
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All DBs
Position
8:8585173..8595695
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AA seq
1312 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALLEEGDQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTTLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPNSTPKKVSSWDQADSSADVCTPGHTPSNSR
WDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRKNR
WDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQIGSSTPL
LTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGY
KVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPDDI
QYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLF
NQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVE
GREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVC
KSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAAL
AEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLI
LIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQ
LVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQL
IDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAA
DLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPP
IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKA
IRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL
MNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVV
QHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQ
GLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLIYNDEKNPFVRYELDYFL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaatcgccaaaacccacgaggatatcgaggcgcagatcctggagatccagggc
atgaaggctgctctgctagaggagggagatcagggtgtcggcctcgattctaccggattc
tacgaccaagagatctacggaggaagcgacagtcgttttgctggatatgtcacatctatt
gctgccaatgagcaagaggaggatgatgaggaagactcctctacgacgctgcttggccag
aagaagccagggtatcatgctccggtggcaattctcaattccattcctcagtcagatgag
cagtatgatccttttgccgagcatcggccacagaagatatcggatcgtgaagatgaatat
aagaggcgcaggcaaaagatgatcatctctccagagcgtcacgacccctttgcagacggg
ggtaaaacgccagatcccaagatgcctgccagatcttacatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggt
gacctgaaagcagtcaatggctctgctgcatctcaagctgctgctcccaaacgcaagcgt
cgatgggaccagactgctgaccagaccccaaactctactcccaaaaaagtgtccagctgg
gaccaggcagatagctcagcagatgtatgtacaccaggacacacaccttcaaatagtcgc
tgggatgagacgcctggtcgtcccaagggtagtgagactcctggagccacccctagtaca
cgcatgtgggaccccacgcccagccacacacctgctggtgctgcaacgcctggccgagac
acccctggtcatgccacccctggtcatggtggtgccacatccagtgtgcgcaaaaatcgt
tgggatgagacaccaaagacagaaagagagacaccgggacatggcagtggctgggctgag
actcctcgaacagacagaggggatgagtctgtgggagagaccccaactcctggagcaagc
aaaaggaagtcccgttgggatgagactcctgcaagtcagataggctcctccacacctttg
ctcactcctggaaaaacccctattggaacaccagctatgaatatggccacaccaactcca
ggtcatttgatgagtatgactcctgagcagcttcaagcatggcgttgggagagagagatt
gatgagcggaatcgtccactgactgatgaagagctggatgctatgtttccagaaggttac
aaggtgctgcccccaccagcaggctacgtgcctatccgcacccctgcaaggaagttatct
gccactccaacacccattggtggcatgactggcttccacatgcaggctgaagaccgaacc
accaaacagatgaatgaccaaccatctggcaacctacctttcctaaaaccagatgacatc
cagtactttgacaaacttctggtcgaggtggatgagtccactttgagtccagaagagcag
aaggagcgcaagatcatgaaactacttttgaaaataaaaaatggcacacctcccatgaga
aaggccgctctcaggcaaatcaccgacaaggccagggaatttggtgctggtccgcttttc
aatcagattctgccgctgcttatgtctcctacccttgaagatcaggagcgccatctgttg
gtgaaggtcattgaccgcatcttgtacaaactggacgacttggttcgaccttatgtccac
aagatcctcgtggtgattgagcccttgctgattgatgaagattactatgctagagtagag
ggcagagagattatctccaacctggcaaaggctgctggtctggccactatgatctccaca
atgaggcctgacattgacaacatggacgagtatgtgagaaacacaacagctcgtgccttt
gctgttgtggcctctgctttgggtattccctccctcctgcctttcctcaaagctgtgtgc
aagagcaagaagtcatggcaggctcgacacacaggcatcaaaattgtgcagcaaattgcc
atcctcatgggttgtgcaatcttgcctcatctccgcagcttggtggagattatcgaacat
ggtcttgtggatgagcagcagaaggtgcgaaccatcagtgctttggctattgctgctctt
gcagaggctgccacaccctatggtattgagtcttttgactctgtgctaaagcccctttgg
aaaggtatcagacaacacagaggaaagggtctggctgctttcttaaaagccattggatac
ttgattcctcttatggatgctgagtatgccaactactacacaagggaagtgatgcttatc
ctcattcgagagttccagtctccagatgaggagatgaagaagattgtgctgaaggtggtg
aagcagtgttgtgggacagatggtgtggaggccaactacatcaaaactgagattctgccc
cctttctttaaacacttctggcagcaccgtatggccttggacaggcgtaattacagacag
ttggtagacactactgtggagctggccaacaaagttggtgcagcagaaatcatctcaaga
atcgtggacgacctgaaagatgaagctgagcagtacagaaagatggtgatggagacaatt
gagaagatcatgggtaacctgggtgcagcagacattgaccacaaactggaggagcagctt
attgatggcatcttgtatgcgttccaagaacagaccactgaggactctgtgatgctgaac
ggttttggaacagtggtgaatgctctgggcaagcgtgttaagccctacctgcctcagatc
tgcggtactgtcctgtggcgtctaaacaacaagtctgctaaagttcgtcaacaggctgct
gacctaatttctcgcacagctgtggttatgaagacctgtcaagaggagaagctgatggga
catttgggtgtagtgctgtatgagtacttgggagaggaatatcctgaagtgcttggaagc
atcctcggagcccttaaagctattgttaatgtcattggtatgcacaagatgacccctcca
attaaagatttacttcctcggttgacaccaatcctgaaaaacagacatgaaaaggtgcaa
gaaaactgcattgatctcgtgggacgcattgctgacagaggtgcagagtatgtgtctgcc
agggagtggatgcgaatctgtttcgaactgctggagctgctgaaagctcacaagaaggca
atccgacgagccacggtcaacacttttggctacatcgctaaggcaattggacctcatgat
gtgcttgccacgctgcttaacaacttgaaagtgcaggagaggcaaaacagagtttgcaca
acagtagcgatagccatcgtggcagaaacatgctcaccctttaccgtactcccagcgctg
atgaatgagtaccgtgtacctgaacttaatgttcagaatggtgttcttaaatccctctcc
ttcttatttgaatatattggtgaaatgggcaaggattatatctatgctgtcactccattg
ttggaggatgctctgatggacagagaccttgtgcataggcagacagccagcgctgtagtg
cagcacatgtcgctgggtgtgtatgggtttggttgtgaagactcgctaaaccacttgctc
aactatgtttggcctaacgtttttgaaacatcacctcacgttatccaagccgtaatggga
gcacttgagggacttcgtgtggctattggaccgtgccggatgttacagtattgcctgcag
ggtttgttccatcctgcacggaaagttcgagatgtgtactggaagatttataactccatc
tacattggctcgcaggatgcgctgatcgcacattatcccctcatctacaatgatgagaag
aacccatttgtccgctatgagctggattactttctgtaa
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integrated database retrieval system
