Tachysurus vachellii: 132850098
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Entry
132850098 CDS
T09596
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04382
Cornified envelope formation
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
tvc04518
Integrin signaling
tvc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132850098 (col4a1)
04518 Integrin signaling
132850098 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132850098 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132850098 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132850098 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tvc04147
]
132850098 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132850098 (col4a1)
Exosome [BR:
tvc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132850098 (col4a1)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132850098 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132850098
NCBI-ProteinID:
XP_060732237
LinkDB
All DBs
Position
8:complement(11417078..11459567)
Genome browser
AA seq
1641 aa
AA seq
DB search
MGTAAGAMRVLLILVAAVLFSAHPSRTEGCSGSSCGRCDCSGVKGSKGERGLPGLQGNMG
FPGVQGHEGPQGPIGPKGDHGEPGAQGMKGTRGPSGLPGIPGIPGHPGIPGQDGPQGPPG
IPGCNGTKGDRGRDGIPAVAGLPGRPGFPGDPGMKGDPGGIINGFIPQKGDRGFSGSPGL
PGPPGNPGLPGPVGPQGVDGIRGYTGEPGPPGPPGDKLSFVGPKGEKGEKGLTGPPGPPG
IPRELGGTTLTYIPGPKGDKGESGQKGDMCSIFQPGIKGEPGPPGLLGKTGKDGESGAKG
EKGDAGVHGFSGMKGQKGEKGPPGYGGGAPGPPGPPGLPGPVGEIGPMGFPGEPGPPGKH
LEGPPGERGFPGENGQKGDKGADGESLRGPNGADGFPGPPGPPGPLSEDCDISYGEPGPP
GPPGLQGEVGQKGDKGDTCIQCSASGPPGLPGAQGPKGNQGFPGQAGSKGEKGEIGPAGP
SGFPGQDGSQGLRGAPGAKGEPGDIYISPELKGEKGSQGFPGSRGLPGIDGIPGADGRPG
LSGQKGEPAREGIKGDRGLDGDPGIRGPTGEKGLPGLPGFGRPGEPGEKGSPGAPGFPGK
PGIPGLKGEPGKVLSTPGPPGPPGPRGDSGLRGLQGERGPVGDQGLPGLPGEKGNPGLSG
IGFPGPPGLKGHSGLPGAPGFPGDPGDPGQDGSPGRPGTPGQKGEPGIGLRGPKGSMGQP
GVQGFAGEKGNIGMPGVPGVEGEPGPPGPQGIKGDSGPPGFPGLTGPPGPPGLGEPGLPG
PMGPPGEPGPLGRIGEKGEKGPQGFPGPAMPGLQGEKGNPGSPGSPGPKGLPGEPGNPGK
DGFPGERGPKGDIGIMGIPGSPGFSGQKGVPGSIGPRGDPGLSGPRGEFGEPGPKGERGD
PGLQGPPGNMTDVEMEHMKGEKGDSGIRGDPGATGQKGVPGEPGDPGMRGKDGMPGSKGK
PGDKGDQGSPGPTGPDGQPGLKGNIGDMGLPGPSGAKGSKGVAGHPGHTGFKGDAGEKGE
KGLAGLPGIGIPGLPGEQGEMGPPGFPGESGEKGVKGSMGIPGIPGMSGQKGDQGLIGYP
GSPGVPGEKGAIGLPGLPGQPGLKGQPGEPGLQGPPGPQGTKGESGKDGFPGAAGERGVP
GTPGTGFPGTPGQAGAKGDKGNPGPPGMAGSPGVPGTKGEKGLPGFQGIQGGPGERGLPG
QSMEGTKGDKGVQGEPGEPGQTGAPGPAGVPGSDGAKGEKGDKGFTGIPGPQGLKGDKGF
TGHPGEPGITGSKGLKGEMGPSGLPGFEGIKGETGLAGFKGETGDRGFPGSKGNDGPPGP
PGPHTFVKGDIGFSGPQGPQGLPGLQGYPGLKGQQGLIGIQGIKGEDGAPGFNGIPGVKG
EPGHTGPSGPRGYPGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQSIDVPLCPQGTTMIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMNMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIAIPSCPQGWISLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFSKPIPT
TLKAGNLLTHISRCQVCMKRT
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagctgcaggcgccatgcgcgtcttgctgattcttgtggctgccgttttgttc
agcgcacatccgagcagaactgaggggtgttcaggctcatcatgtgggaggtgtgactgc
agcggtgtaaaagggtcaaagggtgagagaggtttacctggcttacaaggcaatatggga
tttcctggtgtgcaaggtcatgagggcccccaagggccaataggaccaaagggagatcat
ggtgagcccggagctcaaggaatgaaaggaacacgtggcccttctggtttacctggtatt
ccgggcattcctgggcacccgggtatcccaggtcaagatggtccacagggaccaccgggt
atcccaggctgcaacggaacaaaaggggatcgaggtagagatggaatcccagccgtagca
ggattaccaggacgaccaggttttccaggtgatccaggaatgaagggtgacccaggtggc
attatcaatgggtttattcctcagaaaggagatagaggattttcaggatcaccaggatta
ccaggcccaccaggaaaccctggactaccaggaccagttggcccacaaggagtagatggg
attcgaggatatactggtgaacctggccctcccggacctcctggtgataagctttctttt
gttggtccgaaaggtgaaaagggtgaaaaaggtctcacaggtccaccagggccccctgga
attcccagagagcttggaggaactacgttaacttatataccaggaccaaaaggtgataaa
ggggaatctggacaaaagggtgacatgtgttcaatatttcaaccaggaatcaaaggtgaa
ccaggacctccaggcctattaggaaaaacgggaaaggatggagaaagcggagctaagggg
gaaaaaggtgatgctggtgttcatggcttttctggcatgaaggggcaaaagggagagaaa
ggacctccaggatatggtggtggtgcaccaggccctcctggtcctccaggcttaccagga
ccagttggagagataggccccatggggtttccgggagaacctggtcccccaggtaaacac
cttgagggtcctcctggagagaggggctttcctggagagaatggacagaaaggagacaaa
ggtgctgatggagagtctctcagaggacccaatggagctgatggatttcctggtccacct
ggaccaccagggccattaagtgaggactgtgacattagttatggagaaccaggccctcca
ggacctcctggcttgcaaggagaggtgggacagaaaggtgacaaaggagatacttgtata
caatgctctgctagtggacctccaggtttacctggtgctcaggggccaaaaggaaatcaa
ggttttcctggacaagcaggtagtaaaggagaaaagggtgagattggccctgctggacct
tctggatttccggggcaggatggctctcaaggtttgaggggtgctcctggggcaaaaggt
gaaccaggtgatatctatatatccccagagctgaagggagagaagggctcacaagggttt
cctggtagtaggggattgccaggcatagatggaattcctggagcagatgggcgtccaggt
ctgtcaggacagaaaggagaaccagctagagagggtattaaaggtgaccgtggtctggat
ggagatcctggcataagaggacccactggagaaaaaggactcccaggtcttcctggattt
ggccggcctggagagccaggagaaaagggcagtccgggagctcctggttttccaggaaaa
ccaggaataccaggacttaaaggtgaacctggaaaagttttaagtacaccaggacctcca
ggtccaccaggacctcgtggtgactcaggattgagaggccttcaaggtgaaaggggtcct
gttggagatcaaggattgccaggattaccaggtgaaaaaggcaaccctggactttcagga
attggatttccaggtccaccaggtctaaaaggtcactctggtttaccaggtgcaccagga
ttcccgggagaccctggcgatccaggccaggatggttctcctggacgtcctggaactcct
ggacaaaaaggtgaacctggcattggcctccgtggacccaagggctctatgggacagcca
ggagttcaagggtttgcaggtgaaaagggtaacataggaatgccaggtgtacctggagtt
gaaggagaacctggaccacctggtcctcagggtataaaaggtgactctggcccccctgga
ttcccaggtttgacaggaccacctggacccccaggactcggggagcctggactacctgga
ccaatgggacctcctggagaacctggacccttaggtcgtattggtgaaaagggagagaaa
ggtccccaaggttttcctggtcctgcaatgcctggtctacaaggtgagaaaggcaaccct
ggttcacctggatcaccaggccctaaggggttgccaggggaaccaggaaatccaggtaaa
gatggattccctggggagagaggtcccaaaggagatattggaataatgggaattccaggg
tcacctggattctcgggtcaaaaaggagtccctggatccatcggaccaagaggtgacccc
ggcttgagtgggcctaggggagagtttggtgaaccaggccctaaaggagagagaggagat
cctggtcttcaaggaccacctggtaatatgactgatgtggaaatggagcatatgaaagga
gagaagggagacagcggaatcagaggggatccaggtgctacaggacagaagggagtccct
ggagaacctggagatcctggaatgcgtggaaaggatggaatgcctggttcaaaaggaaag
ccaggtgataaaggtgatcaaggatctcctggaccaacaggaccagatggacagcctgga
ctaaagggcaacattggagacatgggattgccaggaccatctggagcaaaaggcagtaaa
ggtgttgctggccatcctggccatactgggtttaagggcgatgcaggggaaaaaggtgaa
aaaggactagcaggtctaccaggaataggaattcctggcctccctggagagcagggtgaa
atgggtccacctggttttccaggggagtctggagagaagggtgtgaaaggttccatggga
atcccaggcataccaggaatgtcagggcaaaaaggagaccaaggactgattggttaccca
ggtagccctggggtaccaggtgaaaaaggagccattgggttacctggacttccagggcag
cctggccttaaaggacagccaggtgaacctggtctgcagggtcccccagggccacaaggg
acgaaaggagagtcaggaaaagatggattccctggagctgctggagaaaggggtgttcca
ggtacacctggtacaggctttcctggaacccctgggcaggcaggtgcaaaaggtgataaa
ggcaacccaggtccccctggcatggctggaagccctggtgttcctggaaccaaaggagag
aaaggcttacctggatttcaaggtattcaaggtggacctggtgaaagaggactgccagga
caatcaatggaggggactaaaggggataaaggagttcagggagagcctggagaaccaggg
cagactggtgctccaggtccagcaggtgttccaggaagtgatggagctaaaggagagaaa
ggagacaaaggcttcacaggcatcccgggtcctcagggtttgaaaggcgataaaggcttc
actggccaccctggtgaacctggcattacaggcagtaaaggactaaagggtgaaatggga
ccttcaggtcttcctggcttcgaaggaataaagggtgagactggattggctggtttcaaa
ggagaaactggtgacagaggatttccaggatctaaaggtaatgacggccctcctggacct
cctggaccccatacctttgtaaaaggagacattggtttctcaggtccacagggtccccaa
ggtttaccaggtcttcaaggatatcctggactaaaaggacagcaaggattgattggtata
cagggtattaaaggagaagatggggcaccaggatttaatgggattcctggagttaaagga
gaacctgggcatactgggccttctggacccagaggatatccaggtcccccaggtcctgat
ggtgtcccaggtcaggttggccctcctggaccctcttccatggaccatggctttctagtg
actcggcacagtcagtcaattgatgtgcctttatgtccacaaggcaccactatgatctat
gatgggtactccctcctgtacgtgcagggaaatgagcggtcccatggccaagacctgggt
acggctggtagctgtttgaggaaattcagccccatgccattcctcttctgtaacatcaac
aatgtgtgcaactttgcctcacgtaatgactattcctactggctcacatctcctgagccc
atgcctatgaacatggctccaatcactggcgagagcatcaaacctttcatcagcagatgt
gcagtgtgtgaggctcctgccatggtgattgctgtgcacagtcagactatagccatccca
tcctgccctcaaggctggatctctctgtggattggttattcgtttgtcatgcacaccagt
gcaggtgctgagggctccggtcaggctctggcttctcctggctcctgtctggaagagttc
cgctctgctcctttcattgagtgtcatggccgtggcacctgcaactactatgctaattcc
tacagcttctggttggccaccattgaggataatgagatgtttagcaaacctatccccacc
acactaaaggctgggaatctgctaactcacatcagtaggtgtcaagtgtgtatgaagagg
acttaa
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integrated database retrieval system
