Tachysurus vachellii: 132850205
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Entry
132850205 CDS
T09596
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132850205 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132850205 (prpf40a)
Spliceosome [BR:
tvc03041
]
Complex A
U1 snRNP components
U1 related factors
132850205 (prpf40a)
Complex B
132850205 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
Motif
Other DBs
NCBI-GeneID:
132850205
NCBI-ProteinID:
XP_060732482
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Position
8:15144666..15158636
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AA seq
877 aa
AA seq
DB search
MSSTDGNNAPSQAPPFPGVPPSAIPPPFMGPPGIPPHFPPMGMPPMGQRPPNMAPMPGGI
IPPPMMPPLGAPPMGQMPGMMPPMMPPMMPPRMPAATLQPTGPPGVSPVDTAATAAPGTT
TTNDSPQDDQSKKQKSVWTEHKSVDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCPWK
EYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTVDVVAPGTTPTLTAHTDAV
LTVPAVPEAVSTIATSVAEEQPSQMPVQGGEGGSEVTVTSPKDTPTIETQASNDTSKEER
PELVKKVYKWNTKEEAKQAFKELLKEKGVASNASWEQAMKMIINDPRYSALPKLSEKKQA
FNAYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFGEQEVWSCVP
ERDRLEIYDDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDN
PTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQKFLDE
LHDHGQLHSMSAWMEMYPTISSDIRFTSMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIK
DILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEA
RKMKRKEAAFKSMLKQATPSLEPDATWEGVRERFLKEPAFEDVTLESERKRIFKDFMHVL
EHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHSKKKKRSTSKSPSEHSSSGE
SERSYKKSKKHKKKGKKRRHKSASPETDGEKDRKGRDKEKDKENDKSRGKNRSESKQKSP
KRKAPKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctactgatgggaataatgctccaagccaagcgccaccttttcctggagtccct
ccatcagcaataccccctccttttatggggccacctggaataccacctcacttcccacct
atgggaatgccaccgatgggtcagaggcccccaaacatggctcccatgcctggagggata
attccaccacccatgatgcctccgttgggtgctcctccaatgggacagatgccaggcatg
atgccaccgatgatgccgccaatgatgccaccacgcatgcctgcagcgacgttgcagccg
acaggaccgcctggcgttagtcctgtggatacagctgctactgctgcacctggaactact
accacaaatgactccccccaagatgaccagtctaaaaagcagaaatcagtgtggacagag
cataagtctgttgatggtaaaacctattactacaacacagagaccaagcagtcgacctgg
gagaaaccagatgatcttaaatcacctgcagagcaaatgctctctaagtgcccatggaaa
gagtacaagtctgacactgggaagccttattactacaactctcagactaaagagtcacgc
tggacaaagcctaaagaactcgaagaccttgaagcaatgataaaggctgaggagaatggg
acggtggatgtcgtagctcctggcactactcccactctcacagctcacacagatgcagtg
ctcactgtgcctgctgttccagaggctgtctctaccatagcaacaagcgttgctgaagaa
caaccatctcaaatgcctgtgcaagggggtgagggaggcagtgaagtaaccgtgacatca
cccaaggacacccccacgatcgagacacaggccagtaatgacacatctaaagaagaaaga
ccagagcttgtgaagaaggtgtacaagtggaacaccaaagaggaagcgaagcaggctttc
aaagaactgctcaaggagaagggtgttgcgtctaatgcgtcctgggagcaagccatgaag
atgatcattaatgaccctcgttacagtgcactgcctaagctgagtgagaagaagcaggcc
tttaatgcctacaaggttcagacagagaaggaggagaaagaggaggccaggatcaaatac
aaagaatccaaagagacattccagcgcttcctggagaaccatgataaaatgacctccacc
accagatacaagaaagcagagcagatgtttggtgaacaggaagtgtggagctgtgttcca
gagagagacaggctggagatttatgacgatgttctcttctacttggccaagaaagagaag
gaacaagccaagcaactgaggaagaggaactgggaggcactgaaaaatatcttggataac
atggctaatgtcacataccgcaccacctggtcagaggctcagcagtacctgctagataac
cccacgttcgctgaggacgaagagctgcagaacatggataaggaggatgctctgatctgc
ttcgaggaacacattcgcgctctggagaaggaagaagaagaggagaaacagaaatctctg
ctgagagagagacgcagacagcgcaaaaacagggagtctttccagaaatttctggatgag
ttacacgaccacggccagctgcactccatgtcggcatggatggagatgtatccaaccatc
agttcagacatccgcttcactagcatgttaggacaaccgggctctacacctctggacttg
ttcaagttctacgtggaagatctcaaggctcgttatcacgatgagaagagaatcataaaa
gacatcttaaaggataaaggtttcctggtggagatcagcaccagctttgaagactttggt
tcagttatcagctctgacaagagggccaccactctggatgcaggcaacatcaaactagcc
ttcaacagtcttctggagaaggcagaggcacgagagcgagagagagaaaaggaagaggcc
agaaagatgaagaggaaagaggcagccttcaagagcatgctgaagcaggccacgccctca
ttggagcctgatgctacatgggaaggggttagagaaagattcctaaaggagcctgcgttc
gaggacgtcactctggagtcagaaagaaagaggatattcaaagattttatgcatgtacta
gagcacgagtgtcagcaccatcactccaaaaccaagaaacactcgaagaaatccaaaaaa
catcacaggaaacgatctcgttctcgctcaggttctgaatctgaggacgatgagtatcac
tcaaaaaagaagaaacgctccacatcaaaatctccctcagagcactcttcctcaggggaa
tccgagagaagctataaaaaatccaagaaacacaagaagaagggaaagaagagaagacac
aagtctgcttccccagagactgatggagaaaaggacagaaagggacgcgataaagagaag
gataaagagaacgataagtctagagggaagaatcgtagtgaatccaaacagaaatctccc
aagaggaaagcgcctaaagaagagggaggatgggacacgtcaggcagtgaactgagtgaa
ggagagctggagaagaggagacgaactcttttggagcagttagatgcaccttag
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