Tachysurus vachellii: 132850374
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Entry
132850374 CDS
T09596
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tvc04147
]
132850374 (col18a1a)
00535 Proteoglycans [BR:
tvc00535
]
132850374 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132850374 (col18a1a)
Exosome [BR:
tvc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132850374 (col18a1a)
Proteoglycans [BR:
tvc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132850374 (col18a1a)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132850374 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
132850374
NCBI-ProteinID:
XP_060732878
LinkDB
All DBs
Position
8:complement(21476873..21562669)
Genome browser
AA seq
1789 aa
AA seq
DB search
MSSLGLWLGVLVGLCIGHSHGWFWNDDPKDNSVGTPTPAYVTTLGKTDPTTVATTEYQST
KGTDALDVDVLSKGEEKGSEGGSSIGSAWNEQSKAEAKVEHGPGLEPDSGSWNLSGSGLE
PDSGSWNRSGSGLEPDSGSWNRSGSGLEPDSGSWNRSGSGLEPDSGSWNLSGSGLEPDSG
SWNLSGSGLEPDSGSWNLSGSGLEPDSGSWNLSGSGVEPESEPTIKPDTWSPLQEINNIQ
TNLSTGGDNIHAVAEDMKLEKNLTKEDVSETAEHVGTVAPGDPILTEKGVSLSQLIGYPL
PKGITRSYEPDSGFVFDQNSKTGQLARVHLPKSFYRDFSLMFNLKPTSTKAGVIFSITDT
NQKIMYIGVKLTPVKDQKQNIVLFYTEPDSQASYEAASFTVPSLVNSWTRFSLSVLDEKV
TLYPSCDSEPKVLPFERSPDEMELDPGAGIFVGQAGGADDDKFVGVIGDLKVVGDPRVAA
HYCEEEEDDSDGASGEYGSGFFGSGDHPVSTTSQPSNPLQQPPVNPTVVTVSKDVQKGYD
GYGRISGSYGDSRRTSGSHVNSGRSSGSYGTSSGTYDHSQRIFDSHDNSESTSDIYDDSR
RTSVKADGKRTSVWIHDSKRTSDRTADSGRISSSGRATGLSESSRHTNTVSSGGRGVSGS
GAEAGTSSSQVLSGAGVRGEKGDKGDKGPKGDRGLQGPKGDPGSRIGSGGGDGAKGEKGS
QGEKGIKGVAGFGYPGSKGDPGPPGLPGPPGPPGSSVGIVDRGNGSVVQSIPGPMGPPGP
KGSLGPKGSPGPKGEPGDPGEDGTAGPRGFPGTPGDPGAKGEKGDKVEGPPGPRGPPGPP
GPPGLSYRSDRPTFVDMEGSGFSDLEGLRGLPGLPGPPGPPGPPGAPGSEGSSAASHASV
SGVARPTGPPGKDGAPGQTGLPGSDGKPGLPGLPGPKGEKGDTGELGLPGAVGEKGSQGL
PGHAGGPGQPGLAGLPGPIGPVGPPGPPGPPGPGYHVGFEDLEGSGVNVYGGVPGVRGPE
GIRGPPGLPGQPGVPGQKGDKGSDGHPGTVGHPGIDGFPGPQGPKGDRGFKGDRGDPGRD
GIGLPGPPGPPGQIIYQSPDGLDTAVDGRLSGIPGQAGFPGPIGPKGEKGNSGAPGHSIK
GEKGEPGVVIGPDGSPLFLGSSVGHKGDRGPAGPVGPPGPYGPPGMKGEIGMPGRPGRPG
IIGSKGEKGESGSGSGYSYPGPPGPPGPPGPPGPSTYPTDLNRFGRYEDSGRVYPGAKGE
KGDRGVPGIPGAPGNFDVFTLKNELKGERGDPGLKGEKGEPGGHYGSHYGGVQGPPGPPG
PKGDSIVGPPGPQGPPGPIGYEGRPGNPGQPGQPGPPGPPGLPSLPGAHRPTISIPGPPG
PPGPPGQSAGVTVLRTVALMLSTAQRQPEGSLFYLTDTSELYVRVRDGVRKVMLADHNPF
YRDSNNEVAAVQPPPVVHYPPNHSANNGAEDYSPVDAAVRQPESPKSEHPQPDIDPNYST
HYSSHPDSRYPPQPDSRYPPQPDSRYPPQPDSRYTPQPDSRYPPQPDSRYPPQPDSRYPP
QPDSRYPPQPDSRYPPRTDHHIPVPPERYPITPIHRPSTPVHKPEGHVHTSGPGLHLIAL
NSPQVGNMRAIRGADFLCFQQAHDAGLKGTFRAFLSSKLQDLYSIVRKSERNTLPIVNLK
DQVLFSSWESLFGDSEGRMKTNVPLYSFDGRDILRDSAWPEKMIWHGSSGKGHRQMDNYC
ETWRTSDHAVMGLASSLQAGQLLQQKPSSCSNNYIVLCIENSYITQSKK
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcacttggactatggcttggtgttttagtgggtctgtgcattgggcactcacat
ggatggttttggaatgatgacccaaaggacaacagcgttggcactccaacaccagcctat
gtgactactttaggcaaaactgatccaacaacggtagctacaacagaataccagtcaaca
aaaggcacagatgctttggatgtggatgtcctttctaagggtgaggagaaggggagtgaa
gggggatctagcattggttcagcttggaatgagcagtcaaaggcagaggcaaaggtagaa
catggtcctgggttagaacctgactctggatcatggaatctttctgggtctgggttagaa
cctgactctggatcatggaatcgttctgggtctgggttagaacctgactctggatcatgg
aatcgttctgggtctgggttagaacctgactctggatcatggaatcgttctgggtctggg
ttagaacctgactctggatcatggaatctttctgggtctgggttagaacctgactctgga
tcatggaatctttctgggtctgggttagaacctgactctggatcatggaatctttctggg
tctgggttagaacctgactctggatcatggaatctttctgggtctggggttgaacctgaa
tctgagcctacaattaaacctgacacttggtcacctctgcaggaaatcaacaacatccaa
accaatttgtctactggtggggataatatccatgctgttgcagaggatatgaagctggag
aagaatctgaccaaagaggatgtctctgaaacggctgaacacgttggaactgttgcaccc
ggtgaccccattttgacagagaaaggtgtttcgctctcgcagctgattggttaccctctt
ccaaaaggcatcaccaggagttatgaaccagactctggctttgtgtttgatcaaaactcc
aagactggtcagctggctcgcgtgcacctgcccaaatctttttaccgtgacttctctctt
atgttcaacctgaagcccacttccaccaaagctggagtgatcttctcaatcaccgacacc
aaccagaaaatcatgtacatcggggtgaagcttacgcctgtgaaggaccaaaagcagaat
attgtcctcttttacactgagccagactcccaggcatcctatgaggctgcaagctttact
gttccctcccttgtcaactcctggactcgtttctctctcagtgtgttggatgaaaaagtt
accctctaccccagttgtgactcagaacccaaggtgctgccctttgaacgttctccggat
gaaatggagctggatccaggagccgggatctttgtgggtcaagctggaggagctgatgat
gataagtttgtgggtgttattggagatctaaaggtggtcggagaccctcgtgtagctgca
cattattgtgaggaagaagaggatgattccgatggagcctctggtgaatatggaagtggt
tttttcggcagtggtgatcacccagtctcgaccacaagtcaaccttccaatcccctacaa
caacctccagtgaacccgacagtggtaaccgtgagcaaggatgtgcagaaaggctatgat
ggctatggacgaatttctggctcatacggtgattcccgtcgaacgtctggctcacacgtt
aattctggacgatcttctggttcatatggcacttcttctggcacttatgaccattcacaa
cgaatatttgactctcatgacaattctgaatcaacatctgatatatatgatgattcccgg
cgtacatctgtcaaagctgacggcaagcgaacttcggtttggatccacgatagcaagcga
acctcagaccgaactgccgattcagggagaatttcaagctcggggagagcaacaggtttg
tctgagagctcccgacatacaaacaccgtgagttctggtggccgtggagtttctggctcc
ggtgctgaggctggaacttccagctcccaagtgctatcaggtgcaggagttcggggagaa
aaaggtgataaaggagacaaaggacctaaaggagaccgtggtcttcagggccccaaggga
gatccagggtccaggatcggatctggaggcggagacggtgctaaaggagagaaaggtagc
caaggagaaaaaggaatcaagggtgttgcaggatttggctatcctggatcaaagggtgac
ccaggacctcctggtcttccaggtcctcctggtcctcctgggtccagtgttggcatcgtg
gacaggggaaacggctctgtagttcagagtatcccagggccgatgggacctccgggacct
aaaggatctctgggacctaaaggatctccgggacctaaaggagaacctggtgaccctggt
gaagatggaactgctggaccacgtggtttcccaggaacccctggagatcctggagctaaa
ggagaaaaaggtgacaaggtggaaggtcctcccggacccaggggaccaccaggacctccg
ggacctccaggactctcatatcgctcagacaggcctacatttgtggacatggagggctct
ggctttagtgatctagagggtttgcggggattgcctggtttgcctggtcctcctggccca
cctggcccacctggagcccctggatctgaaggtagttctgctgcttcacatgcttctgtt
tctggcgttgccagacctactggtccacctggaaaggatggtgctccaggacaaacggga
cttccgggttctgacggaaagcctggcctgcctggcctgcctggccctaaaggagaaaag
ggtgataccggcgagctcggcttacctggagctgtcggggaaaagggttcacaggggctt
cctggccatgcaggaggacccgggcagcctggtctcgctggccttccaggaccaatagga
cctgtgggaccacctgggcctcctgggcctcctgggcctggctaccatgttggatttgag
gatctggagggttcaggtgtaaacgtttatggtggcgtccctggtgtcagaggacctgaa
ggcatacggggtccacctggtcttccgggtcagcctggtgtacctggacagaaaggagat
aaaggtagcgacggacatccaggaacagttggccatcctggaattgatggctttcctggc
ccacagggacctaagggtgaccgaggatttaaaggagacagaggtgatccaggtcgcgat
ggtattggccttccaggaccacctggaccaccaggacagatcatctatcagtctccagac
ggtcttgatactgcggttgatggacgtctgtctggcatccctggtcaagcaggattccca
ggcccaataggaccgaagggtgagaaaggaaactccggtgctccaggacatagcattaag
ggtgagaaaggagaacctggtgtggttattggacctgatggaagccctctgtttcttggt
tcatcagttggtcataagggggatagaggacctgctggacctgttggaccccctggacca
tatggacctcccggcatgaagggtgaaatcggaatgccaggcagacctggacggccaggt
ataattggaagtaaaggagaaaaaggagagtctggctctggttcaggatacagctatcca
ggtcctccaggtcctccaggtccaccaggtccaccgggaccatcaacataccctacagat
ctaaacagatttggtagatatgaggactctggtagagtgtatccaggtgcgaaaggagag
aagggagatcgtggggttcctggtattcccggggcaccaggcaactttgatgttttcaca
ctgaagaatgagctgaagggtgagcgtggagaccccgggctgaaaggagagaagggcgag
ccgggcggacactacggttctcactatggaggtgtgcagggaccaccaggacctcctggt
cctaaaggagattctatcgtagggccacctggtccacagggtccaccaggacctattggt
tatgaaggtcgtccaggaaacccaggacaaccaggacaaccaggacctcctgggccacct
ggtttaccctcattacctggtgctcacagacctacaatcagcattcctggccctcctggt
cctcctggtccacctggccaaagcgccggagtgacagtactgagaacagttgccttgatg
ctttcaacagcacagagacaaccagagggttctctgttttacctaacggacacaagcgag
ctctatgtcagagtgcgtgatggtgtcagaaaagtcatgcttgcggatcataaccccttc
tacagagattcaaacaatgaggtggcagcagtacagcctcccccagtagtgcactaccct
ccgaaccactcggcaaataacggtgcagaagactactcccctgtcgatgctgcagtccgg
cagccggagagtcccaagagtgaacatcctcaaccagacattgatccaaactacagcaca
cactactcctctcacccagacagcaggtacccacctcagccggacagcaggtacccacct
cagccagacagcaggtacccacctcagccagacagcaggtacacacctcagccagacagc
aggtacccacctcagccagacagcaggtacccacctcagccggacagcaggtacccacct
cagccggacagcaggtacccacctcagccggacagcaggtatccaccccgcactgatcac
cacatccctgtacctccagagaggtaccccatcacgccaatccacagacccagcacacct
gtccataagcctgagggtcatgtacacacatcaggaccagggctgcatctgatcgccctg
aacagccctcaggtgggtaacatgagggccatccgtggtgcagacttcctgtgcttccag
caggcacatgatgcaggtttgaagggaacatttagggctttcctgtcctccaaactgcag
gatctatacagcatcgttcgcaaatctgaaagaaacacgctgcctattgtcaaccttaag
gaccaagtgctattcagcagctgggaatcgctgttcggtgattcagagggcaggatgaag
accaacgtacccttatattcctttgatggcagggacatcctcagggatagtgcttggcca
gagaagatgatctggcatggctccagtgggaagggtcaccgtcaaatggataactactgc
gagacgtggaggacgtcagatcacgccgtgatgggtctggcctcttctctgcaggctggc
cagctcctacagcagaaacccagcagctgctccaacaactacatagtgctgtgtatcgag
aacagctatatcacacagtctaagaagtaa
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integrated database retrieval system
