Tachysurus vachellii: 132850485
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Entry
132850485 CDS
T09596
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132850485 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132850485 (bard1)
04121 Ubiquitin system [BR:
tvc04121
]
132850485 (bard1)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132850485 (bard1)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132850485 (bard1)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
132850485 (bard1)
Ubiquitin system [BR:
tvc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
132850485 (bard1)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
132850485 (bard1)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
132850485 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
zf-RING_6
Ank_4
Ank_3
Ank_5
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
zf-RING_10
DUF6615
PTCB-BRCT
zf-C3HC4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
132850485
NCBI-ProteinID:
XP_060733093
LinkDB
All DBs
Position
8:27211984..27238423
Genome browser
AA seq
740 aa
AA seq
DB search
MASDPEAQPDNGLWIKTREAMVHFRKLLLCSKCANILTEPVCLGVCEHLLCRSCAGSRVG
DGCSVCLSPAWVKDVRINRQISNITQLFLQLEAVLCPSECSELPADSPAPSTEPSVLTKK
KNFKIWFSPKSRKVRCRAENTADSNPSVPQRSDSSVLSVFNFTSSSQDSGSSTPPRARAG
TERKKKKKKELKKLKNVVKKRVRGTRIQNKEKKKRLKAVNQQWGFGKDDAMEDEEDKIEE
RSGKRVSFQCPSSGTKQEVEEVQEVSQGEEPVISPKRQMRSILKDGREKQPDQALSEIQQ
HPCSTPKRSRAQGGSPQSTPKRPRLSPGQRARRGRSGPSPVTSLYSGINERSVEDRKEKE
GRGNSPASGRSQASPAYMKRNHKGETPLHLAAIKGDVETTRELLEQGADPNLKDHAGWTP
LHEACNLGHVGVVELLLQQGALINTPGYENDSPLHDAVRNGHAAVAKLLLHHGASITVLN
IFGLRPVDYAATAEMREVLSLVPEALHAVTTPVSSPANLLKSPALMKKDVHVTLIGSKLT
AAQQNQLTKAARILGGKRAETFSSAVTHVIVADGPMPSTLTVLQGILSGCWVLSFTWLAE
CLQQGRWMEESGFEAGDGPQRSRLNRVSLLPPLFDGCFFYLLGSFHKPPRDELVQLVRVG
GGQMLSRQPKADSDVTQTVMAAAYHARPDSDQAFCTHYVLYDPQSSSRPGPVRLGKVWSA
PSSWLLDCIRAFSMLPVPEL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgatcctgaagcacaaccagataatgggttgtggattaaaactcgagaggcc
atggtacatttccggaagctacttttgtgctctaaatgtgcgaacatcctgacagagccg
gtgtgtctgggagtgtgtgagcatctgctgtgtaggtcatgtgcaggttctcgtgtggga
gacggctgcagtgtgtgtctcagtcctgcctgggtgaaagatgtccgcataaatagacag
atcagtaacatcacacagctcttcctgcagctagaggctgttctctgtccctctgagtgc
tcagagcttcctgctgattctccagcaccctcgacggaaccctcggtccttaccaagaag
aagaacttcaagatctggttcagcccgaagagccgtaaagtgcgctgtcgagcggagaac
acggccgactctaacccgtccgtaccgcaacgttccgactccagcgtcctgtccgttttt
aacttcacctcctcctcgcaggattcaggctcctccacacctcccagggcgagagcaggc
actgaacggaagaaaaagaagaagaaagaactaaagaaactaaagaacgttgttaagaag
cgagtccgaggcaccaggattcaaaataaggagaagaagaagaggctaaaggccgtgaac
cagcagtgggggtttgggaaagatgatgcgatggaggacgaggaggacaagattgaggag
aggagcggaaagagggtgtccttccagtgtccaagcagtggcactaaacaggaggtggaa
gaggttcaggaggtttcacagggtgaggaaccagtcatcagcccaaagagacagatgagg
agcatcctgaaggatgggagggagaagcaacccgatcaagctctctccgagatccaacag
catccttgttctactccaaaaagatccagagcgcaaggcggaagcccacagagcacaccg
aagcgtcccagactgtctccaggccagagggcgaggaggggaagatccgggccgtctcca
gtcacctctctttattccggcattaatgaaagatccgtagaggataggaaagagaaggaa
ggccgagggaattctcctgctagtgggaggagccaggctagccccgcctacatgaagagg
aaccataaaggagagacacctctgcacctcgccgccattaagggtgacgtagagaccacc
agagagctgctggagcagggagcagaccccaacctgaaggaccacgcaggctggacacca
ctgcatgaggcgtgtaacctgggtcatgtgggtgtggtggagctgctgctccagcagggg
gcgctgataaacacacccggctacgagaacgactctcctctacacgatgccgtgaggaac
ggacacgctgccgtagccaaactgctgcttcatcacggtgcctcaatcactgtactgaat
atatttggccttcgacctgttgattatgccgcgactgcagaaatgcgagaggtcttaagt
ttggtccctgaggcactccatgcagtaacgacgccagtgagctctccagcaaacctttta
aagtctccagctctgatgaagaaagatgttcacgtcacactgatcggtagtaaactgaca
gcagctcagcagaaccagctcaccaaagcagctcgaatcctgggaggaaaacgagccgag
actttctccagtgcagtcacacatgtgatagtggctgatggtcccatgccctccaccctc
accgtcctgcagggaatcctcagtggctgctgggttttatccttcacatggctggccgag
tgtctgcagcagggccggtggatggaggagagcgggtttgaggcgggcgacgggccacag
aggtctcgactgaacagagtcagtctgctgcctccgctcttcgacggctgcttcttctac
ctgctcggctcgttccacaagcccccgagagacgagctggtgcagctggtgagggtcgga
ggaggccagatgctcagccggcagcccaaagccgacagcgacgtgactcagacggtgatg
gcggcggcgtaccacgctcggcccgactcggatcaggcgttctgcactcactacgtcctg
tacgatccacagagctcgagcagacccgggccagtccgtctgggcaaagtgtggtcagct
ccttcatcgtggctactggactgcatcagggccttcagcatgcttcctgtgcccgagctc
tga
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