Tachysurus vachellii: 132851192
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Entry
132851192 CDS
T09596
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132851192 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132851192 (edc4)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132851192 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
132851192 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EDC4L
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
132851192
NCBI-ProteinID:
XP_060733847
LinkDB
All DBs
Position
9:14970605..14999338
Genome browser
AA seq
1383 aa
AA seq
DB search
MASSSNIDIEGATQHLRDILKLDRPTNSTESTAGESQRKTSCNGELNGLLGTDLIGAGVL
STVMDPTTHSSDNINMADTQTISLTGDDGSTCIPITASNVVIVASQDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGASNQYMIRVLRLGSTERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSQNSKIQDEVIVHIRRPDDTPLNSSRRLIWCP
FIPEDNEENPEDCCQTIALLHEDRAEVWDLDILRSSNTKWPVDATEIKEGFIAIKGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGLDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIKFNPDPVNSSVLPSLKASLDLSAEC
LILTDVQRKVLYVMELLQDQEKGHASFMAVSEFLLTHPVLSFGVQDVSHARLRHTEVLPP
DEESESMTTEGSQGPLESKSGIQIKLYCVHTKSLQDVQIWFQPNQGAAAASLFLPTCSGP
PDSFGFADPLTDLSMEMLSSDKESGASDSQSDLCKIPSLPAPADFLSPSGSTMPKLMTPD
AFMTPSASVPASPGSSASSLTIVTAMSSSDSGPRAAEDLTQSPKLCTDAASSSLNLSANT
SSPRANSILISGLGENIQVLPSPNPSMSLDLQAMEPVLLPQASPTRTRSPDVISSASTAM
SQDIIPEIASETLPRGMAEARDPLQGLQDSMASAASALHLLSPLELSGGASGDTEQRLSS
TPSLLETALSQENAVNAVASSCSESGASRSWPAAPDITRETRNSLRDNGLGECSREDLKD
LHMSSPFHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGSRASHRLPVKDWKSSP
RGSPKLKRKSKKDEGDSSQSRHLDNQMSVEVQEELLLLLRSQQRELDELRQSQQELLQRL
TGHMDAVQSSIMAHVEHVLLTQQEQGQRTVERVLAEGHAHNQQLQEHLSQQLAHTLGTTV
SNRLDKVLREEMKKTVPQTVNKSLEPLTGQMSNIIAAKLTSVEATLKENVTKVVKSKNTT
DAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLETH
VKNRKQREQDARDPVIGQLQQMIDSLQTSQDQLATTVAASVRTEVQHQLHLIVGNLQDSI
LSQVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAASTPVPTAHLDFQAQQANILQLLQQG
QLNEAFQQALSAADLNLVLYVCETVDSQQVFGQTPCPLHQAVLLSLIQQLSTNLVTRTDL
KISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLFQFLQQDPHSSLSKRARRLLMMLQGL
VNH
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaacatagatatagaaggggcgactcagcacctgagagatatctta
aaactggatcgacccactaactcaaccgagagcactgcaggtgagagccagcggaagacc
tcgtgtaatggagagctaaacggcctgctggggactgaccttattggagcaggagttcta
agcactgtgatggatccgacaactcacagctctgacaacataaacatggcagatactcag
acaatttctctgactggagatgacggctctacctgtattcccatcacagcaagcaatgta
gtaattgttgccagccaagactccagtattgacagtaaagctcgtgggagtaataaggtt
aaaatccagccagtggcaaaatatgactgggagcacaaatactactatggcaacctaata
gcagtgtctaatgcgtacttggcgtatgccattcgaggtgccagtaatcagtatatgatc
cgggtcctgcgattgggctcgacggagcgcacactgcttaagggtttcacaggagctgtc
acagacctggccttcgcccatcttgactccacccttttgggttgcgtggatgaagccggc
aacatgttcatctggcagctcaccagccaaaacagcaaaatccaagatgaagtgattgtg
cacattcggagacctgatgacacaccgctgaactcaagccgtagactcatctggtgcccc
ttcattcctgaggacaatgaggagaacccagaggactgctgccagacaatagcattgctg
catgaagatagagctgaggtttgggaccttgacatcctacgctctagcaacaccaagtgg
cctgtcgatgctacagagattaaagagggcttcatcgccattaaaggacacacagcgcgt
atcagtgagggagctctgtctccagacggcaccgttctcgccacagccagtcacgatggc
tatgtcaaattctggcagatttacattgaagggctggaccaaccaagatgtcttcatgag
tggcagccacataacggaaggcctctctcctgcctcctcttctgtgacaaccataagaag
caggacccagaagttccgttctggcgattcttaatcacaggagcagatcagaaccaggaa
ctgaagatgtggtgcacagtatcatggacctgtctacagactattaagtttaaccctgac
ccagttaactcgagtgttctgcccagtctgaaagccagtctggacctatctgctgagtgc
cttatcctaacagatgtgcagaggaaggttctgtatgtgatggagctacttcaagatcag
gaaaagggccatgcaagctttatggctgtctcagagttcttactcacacaccctgtccta
agttttggtgtccaggatgtcagtcatgctcgcttgcgccacaccgaagtcctccctcca
gacgaggagagtgaaagcatgacgacagagggaagccagggacctttggagtcaaaatca
ggaatccagatcaagctttactgtgtgcatacaaaatcccttcaggatgtgcagatctgg
ttccaacccaatcagggtgctgctgctgcctccctgtttttgcctacgtgttctggccct
cccgacagctttggctttgcagaccctctgactgatttgagcatggagatgttgagctca
gataaggaatctggtgcaagcgattcacagagcgacctgtgtaagatcccctctctcccg
gctccagctgacttcttgagcccctccggctcgaccatgcccaaactcatgaccccggat
gccttcatgacacccagtgcatctgtcccagcctcccctggcagcagtgctagcagtttg
actatagtaacagccatgagcagctctgacagcggtccaagagctgcagaggacctcacc
cagagccctaagctgtgtacagatgcagccagtagcagcttaaacctcagtgccaacact
agcagtccaagagccaactctattctcatttcaggcctgggagagaacatccaggtgctg
ccctctccaaacccctccatgtctttggatctccaggccatggaacctgtgctgctgcca
caggcatcgcctactagaactcgttctcctgatgtaatctcttcagcctccacggccatg
tcgcaggacatcatccctgagattgcctccgagacgttgccaagggggatggctgaggca
cgcgatcctctccaggggctgcaggacagcatggcatcagcagcctcagcgctgcacctg
ctttcacctctggaactaagcggtggagcatctggagatactgagcaaaggctcagcagc
acaccctcattgctggagaccgcgctgtcacaggaaaatgctgtaaatgctgttgcatca
tcctgctctgaaagtggtgccagccgcagctggcctgcagcaccggatataacacgtgaa
acaaggaacagcctgcgagataacggcctgggagaatgctctagagaggacttgaaggac
ttgcacatgtcatcccccttccacagacgcacctaccacctaacacagaatgacagccag
gatgccagtgcagagcagagtgatcatgatgatgaggtggccagtctggcgtcatcttca
ggaaactgtggctctcgagcctctcacagactgccagtgaaggactggaagtcttcacct
cgtggctcacccaaactcaagcgcaagagcaagaaagatgagggcgattcctcacagtcc
aggcatttggataatcagatgagcgtggaggtacaggaggagctgctgttgctacttagg
agccaacagagggagctggatgagctgcggcagagccagcaggagctgttgcagaggctc
acgggccacatggatgctgtccagagctccataatggcccacgtagagcatgtcctgctc
acccagcaggaacagggacaaagaacagtggagcgggtgttggcagaaggacacgcacat
aatcagcagctccaggaacacctctcacagcagctagctcacaccttgggcaccaccgtc
tcaaatcgcctagacaaagtgttgcgtgaagagatgaagaaaacagttcctcagaccgta
aacaagagtctggaacccttgaccggacagatgagtaacattattgcagccaagcttact
tcagtggaggccacgctaaaggagaatgtcaccaaagttgttaagtctaagaacactact
gatgccattggccgagccgcagctgaagccatgcagggtcccatacaggcagcctacaaa
gatgccttccaaagcattgtgctccctgtgtttgagcgtggctgtcagtccatgtttcag
caaattaatgacagctttaaacaaggaaccaacgagtacattcagcagctggagacacat
gtcaagaacaggaagcagcgtgagcaagatgctcgagaccctgtaattggtcagctgcag
cagatgattgattcattacagacttcccaagaccagctggccaccacagtagcagcaagt
gtgcgcactgaggttcaacaccaactccacctgattgtgggaaatctgcaggattcgatc
ctgagccaagtgcagcgcattgtaaagggcgaggtgagccaggctatgaaggagcagcag
gcagtagtcacatccagcatcatgcaggccatgcgctctgcggccagcacgcctgtcccc
actgcccacctcgatttccaggcacagcaggccaacatcctgcagctgctgcaacagggc
cagcttaacgaggctttccagcaggccttgtctgcagccgatctgaacctggtactgtac
gtgtgtgagaccgtcgactctcagcaggtgtttggtcagactccctgccccctgcaccag
gccgtactgctctcactcatccagcagctctccactaacctggttacacgcactgacctc
aagatcagctatctggaggatgcagtgatgaacctagatcatggcgacccagtcaccagg
gaccacatgagtgccgtgctgtcacaagtgcgtcagaagctgttccagttcctgcagcag
gaccctcacagctccctgagcaagcgtgcccgccgcctcctgatgatgctgcagggtctt
gttaaccactag
DBGET
integrated database retrieval system
