Tachysurus vachellii: 132851809
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Entry
132851809 CDS
T09596
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b
KO
K13218
polypyrimidine tract-binding protein 1
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132851809 (ptbp1b)
03041 Spliceosome [BR:
tvc03041
]
132851809 (ptbp1b)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
132851809 (ptbp1b)
Spliceosome [BR:
tvc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
132851809 (ptbp1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
132851809
NCBI-ProteinID:
XP_060734814
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All DBs
Position
1:24224130..24235804
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AA seq
562 aa
AA seq
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MDGRLETDLYPMGSTYAELDVVHDIAVGTKRGSDELFSCVPNGPYIMSSAANGNDSKKFK
GDIRSPGVPSRVIHVRKLPSDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQ
TMVSYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGGMSLGGID
AGSGPSPVLRVVVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFSDGLTAQ
HAKLALDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPALEHHPMT
AAFATPGIISAGPFAGAHAFPPAFTIQQAAGLTMPGVHGALASLAIPGAAAAAAAGRLGF
PSLPSGHCVMLVSNLNPERVTPQCLFILFGVYGDVIRVKIMFNKKENALIQMSDGTQAQL
AMSHLNGQKLYGRALRITLSKHTNVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNI
FPPSSTLHLSNIPPSVVEEDLKMLFASSGAVVKNFKFFQKDRKMALIQMGSVEEAIESLI
EFHNHDLGENHHLRVSFSKSTI
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagagactgacttgtatcctatgggatcgacttatgcagaattagac
gttgtacatgatattgcagttggaacaaagagaggatctgacgaacttttctcctgtgtt
cccaacgggccatatatcatgagttcagcagctaatggcaatgacagcaagaagttcaaa
ggtgatatcagaagtcctggtgtaccttctcgtgtcatacatgtacgcaagctccccagt
gatatcaatgaagctgaggtcatttctttaggccttccctttggaaaagtcaccaacctg
ctcatgctgaaaggaaagaatcaggcttttcttgagatgaatacagaggaggcagcccag
actatggtcagctattactcttcagtcacaccagtcatcaggaatcatcccatctttatg
cagtactccaaccacaaggagctgaaaacagacaactcaccaaaccaagtgagagcacag
gcagcgctgcaggctgtgaatgcagtccagacaggtggcatgtcattaggtggtatagat
gcaggcagtggccctagccccgtcctcagggtggtggtggagaacctcttctacccagtc
actctggatgttctgcaccagatcttttccaagtttggcaccgttttgaaagttattact
tttactaaaaataaccaattccaagcacttctgcagttttctgatggtcttactgctcag
catgcaaagctggccctggatggacagaatatctacaatgcatgctgcactctgcgcatc
agtttttccaaactcaccagtttgaatgttaagtacaacaatgacaagagtcgggactac
actcgacctgacctgccttcgggagatggccagcccgctcttgaacaccatccgatgacc
gctgcatttgctacccctgggataatttctgctggtccgtttgctggtgcccatgccttt
cccccagcttttaccattcagcaggctgcaggcttgaccatgccaggtgttcatggagcc
ttggcctctttggccattcctggtgcagcagcggctgctgcagcaggcagactgggtttc
ccttctcttccttcaggccactgtgtcatgctggtcagcaacctgaatcctgagagagtt
acgccccaatgcctctttattcttttcggtgtatatggtgatgtgataagagtaaagatt
atgttcaacaaaaaggagaatgcccttatccaaatgtctgatggcactcaggctcagcta
gccatgagccatttgaacggacagaagctgtatggacgggcgctgcgcatcactttatcc
aagcacacaaacgttcagctgccacgtgagggacacgaggatcagggcctcactaaggat
tacagtaactctcctctccaccgttttaagaagcctggctccaagaactactcaaacatc
ttcccaccctcctcaacactgcacctctccaacatccccccatctgttgttgaggaggat
ctaaagatgctttttgccagctctggtgctgtggtcaagaacttcaagttctttcagaaa
gatcgcaagatggctctgattcaaatgggctctgtggaagaagcgatcgaatcccttatt
gagttccacaatcatgatcttggtgaaaaccaccatcttcgagtgtccttctccaagtca
actatttga
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