KEGG   Tachysurus vachellii: 132853027
Entry
132853027         CDS       T09596                                 
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
tvc  Tachysurus vachellii
Pathway
tvc03013  Nucleocytoplasmic transport
tvc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    132853027 (srrm1)
   03015 mRNA surveillance pathway
    132853027 (srrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tvc03019]
    132853027 (srrm1)
   03041 Spliceosome [BR:tvc03041]
    132853027 (srrm1)
Messenger RNA biogenesis [BR:tvc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     132853027 (srrm1)
Spliceosome [BR:tvc03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    132853027 (srrm1)
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 132853027
NCBI-ProteinID: XP_060736614
LinkDB
Position
10:complement(1977415..1990131)
AA seq 788 aa
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVLKKVDEDKKERESKEKAQSRSPKRRKSRSPAKRERKRSHS
RSPRRKPSPPALPLPSPPSNKPEPQPEPDQSESSKPEPLVQEASSTSDLTNETKLDLVAE
VPKDVSPEKPAKTEDKPKPRDRERDREKDGRRDRPRHRTRSRSPRPRRRHRSRSRSYSPR
RKPSPRRRMSPRRRSPPRRPPPPRHRRSRSPARRRRSRSRSSSGSSSSRSPHKKPTKRSS
ITPPRKQPRRTDTSSSPSRRRRSPSGSARRPAGRNESPSPAPKPRRSDLSESEEDKLGKG
AAVDSVQQRRQYRRQNQQSSSDTGSSSSSSEDEGQRRMGRGQPARNGDIRRRRSHSPVSP
RRRHRDISPPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRYSPSP
LPAHKRRPSPLPAPPKRSSPRSSSSPPPRSRRSPPMSSGRQSSPQGRYPAAGSSPQRRGQ
SPSHGRAIRRVSRTPEPRNLQRDSQSPRPMRRQSSRSRSASPDHFPASSAAAPVSLKRPA
SASPSPSPARSASGSPPPPAKKASSASPSPSPNKNSDIDGGKKKKKKKEKKHKKEKKHKK
HKKHKKEKGGAAPSGDGQENVRTEEEHEPSQKKESESEVEDSLDDLEKHLREKALRSMRK
AQLSPPQS
NT seq 2367 nt   +upstreamnt  +downstreamnt
atggacgcggggtttttccgcggcaccagtgcggagcaggacaaccgcttcagtaataaa
cataagaagttgttgaagcagctgaagtttgcagaatgtctggagaaaaaggtggacatg
acgaaagtaaacctggaggtcatcaagccatggatcacgcagcgtgtcaccgagatcctc
ggcttcgaggacgacgtcgtggtcgagttcgtcttcaaccagctggaggagaagaaccca
gacggtaagatgatgcagattaacctgaccggtttcctgaacgggaagaacgcacgcgag
ttcatgaaggacctctggcccttgctgctgagcgcgcaggagaacatcgccgggatcccg
tccgcctttctcgagcagaagaaagaggagatcaagctcagacaggagtcactggcggta
ttgaaaaaggtagatgaagataagaaagagagagagagcaaagagaaagctcagtcccgg
agtcccaaacggagaaaatcccgttcacctgcgaagcgcgaaaggaaacgcagccactct
cgttcacctcgacgcaaacccagcccaccggccctgcccctgcccagtccacccagcaac
aaacccgagcctcaacctgagcccgaccaatcagagagctccaaaccagaacctctggtc
caggaggcttcctccaccagtgatctgacaaacgaaacaaagctggatttggtggctgaa
gttcctaaggacgtgtctcctgagaaacccgcaaagacggaggacaaaccgaaaccgaga
gatagagagagagatcgggagaaagatggacgcagagatcgtccacgccatcgcacacgg
tctcgctcgcctcggccacgacgtcgccaccggtcacgatctaggtcatactcacctcgg
cgcaaaccgagcccgaggagacgcatgtcccccagacgcaggagtcctccaaggagacca
cctcctcccagacacagacggagccgctctcctgcccgcaggcggcgttcacgctctcgc
tcgtcttcaggcagctcttcttcacgctcacctcataagaagccaactaaacgcagctct
atcacaccacccaggaagcagccacgccgcactgatacatcatccagccccagcaggagg
cgccgcagcccctcaggttcggctcggcgacctgctggaagaaacgagtcgccttctcct
gctcctaaacccagacgatcagacctctccgaatccgaggaggataaattggggaagggg
gctgcggtcgattcagtccaacagcgacggcagtatcgtagacagaaccagcagtcgtct
tcagataccggatcatcctcctcgtcctccgaggatgaagggcagaggagaatgggcaga
gggcaaccagcaaggaacggggacatcaggaggaggcggagtcactcacccgtgtcacct
aggagacggcacagagacatatcaccaccgagaaagagacgatctccatctcctcgtcgt
caccgctcaccttcacccagacggcgtaggtcaccatcgcctccacccagacgcaggtcg
ccttcgccccctcctcgccgctattcaccgcccatccagcggcgctacagcccatcgcct
cttcctgctcacaagagacgcccttctcctttacctgctcctccgaagcgtagcagtcca
cgctcgtcttcctctccccctccacgctcacgccgtagccccccgatgtcctcaggacgt
cagagcagcccgcaaggcaggtacccggctgcagggtcgtccccgcagcggcggggccag
tctccgtctcacggcagagccattcgcagggtgtctcgtacacctgagccacggaacttg
cagagagattctcagagcccacggccaatgagaagacagtcatctcgttctcgctctgcc
tcacctgatcatttcccagcatcctcagcggcagcccccgtgtctctcaagaggccggcg
tctgcgtccccctctccgtcccccgctcgctcggccagcggctctcccccacctccggct
aagaaggccagcagtgcctctccaagcccttcccccaacaagaactctgacatagacggc
ggcaagaaaaagaagaaaaagaaggagaagaaacacaagaaggagaagaaacacaagaaa
cacaagaagcacaagaaggagaaaggcggcgccgctccgtcaggggacggccaggaaaac
gtccggacggaggaagagcacgaacccagtcagaaaaaggaatcagagagtgaagtagag
gacagtctggatgatttggagaagcacctgagggaaaaagctctacgttccatgaggaaa
gcccagctgtctcctccccagtcttga

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