Tachysurus vachellii: 132853027
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Entry
132853027 CDS
T09596
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03013
Nucleocytoplasmic transport
tvc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132853027 (srrm1)
03015 mRNA surveillance pathway
132853027 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132853027 (srrm1)
03041 Spliceosome [BR:
tvc03041
]
132853027 (srrm1)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132853027 (srrm1)
Spliceosome [BR:
tvc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
132853027 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
132853027
NCBI-ProteinID:
XP_060736614
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Position
10:complement(1977415..1990131)
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AA seq
788 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVLKKVDEDKKERESKEKAQSRSPKRRKSRSPAKRERKRSHS
RSPRRKPSPPALPLPSPPSNKPEPQPEPDQSESSKPEPLVQEASSTSDLTNETKLDLVAE
VPKDVSPEKPAKTEDKPKPRDRERDREKDGRRDRPRHRTRSRSPRPRRRHRSRSRSYSPR
RKPSPRRRMSPRRRSPPRRPPPPRHRRSRSPARRRRSRSRSSSGSSSSRSPHKKPTKRSS
ITPPRKQPRRTDTSSSPSRRRRSPSGSARRPAGRNESPSPAPKPRRSDLSESEEDKLGKG
AAVDSVQQRRQYRRQNQQSSSDTGSSSSSSEDEGQRRMGRGQPARNGDIRRRRSHSPVSP
RRRHRDISPPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRYSPSP
LPAHKRRPSPLPAPPKRSSPRSSSSPPPRSRRSPPMSSGRQSSPQGRYPAAGSSPQRRGQ
SPSHGRAIRRVSRTPEPRNLQRDSQSPRPMRRQSSRSRSASPDHFPASSAAAPVSLKRPA
SASPSPSPARSASGSPPPPAKKASSASPSPSPNKNSDIDGGKKKKKKKEKKHKKEKKHKK
HKKHKKEKGGAAPSGDGQENVRTEEEHEPSQKKESESEVEDSLDDLEKHLREKALRSMRK
AQLSPPQS
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcggagcaggacaaccgcttcagtaataaa
cataagaagttgttgaagcagctgaagtttgcagaatgtctggagaaaaaggtggacatg
acgaaagtaaacctggaggtcatcaagccatggatcacgcagcgtgtcaccgagatcctc
ggcttcgaggacgacgtcgtggtcgagttcgtcttcaaccagctggaggagaagaaccca
gacggtaagatgatgcagattaacctgaccggtttcctgaacgggaagaacgcacgcgag
ttcatgaaggacctctggcccttgctgctgagcgcgcaggagaacatcgccgggatcccg
tccgcctttctcgagcagaagaaagaggagatcaagctcagacaggagtcactggcggta
ttgaaaaaggtagatgaagataagaaagagagagagagcaaagagaaagctcagtcccgg
agtcccaaacggagaaaatcccgttcacctgcgaagcgcgaaaggaaacgcagccactct
cgttcacctcgacgcaaacccagcccaccggccctgcccctgcccagtccacccagcaac
aaacccgagcctcaacctgagcccgaccaatcagagagctccaaaccagaacctctggtc
caggaggcttcctccaccagtgatctgacaaacgaaacaaagctggatttggtggctgaa
gttcctaaggacgtgtctcctgagaaacccgcaaagacggaggacaaaccgaaaccgaga
gatagagagagagatcgggagaaagatggacgcagagatcgtccacgccatcgcacacgg
tctcgctcgcctcggccacgacgtcgccaccggtcacgatctaggtcatactcacctcgg
cgcaaaccgagcccgaggagacgcatgtcccccagacgcaggagtcctccaaggagacca
cctcctcccagacacagacggagccgctctcctgcccgcaggcggcgttcacgctctcgc
tcgtcttcaggcagctcttcttcacgctcacctcataagaagccaactaaacgcagctct
atcacaccacccaggaagcagccacgccgcactgatacatcatccagccccagcaggagg
cgccgcagcccctcaggttcggctcggcgacctgctggaagaaacgagtcgccttctcct
gctcctaaacccagacgatcagacctctccgaatccgaggaggataaattggggaagggg
gctgcggtcgattcagtccaacagcgacggcagtatcgtagacagaaccagcagtcgtct
tcagataccggatcatcctcctcgtcctccgaggatgaagggcagaggagaatgggcaga
gggcaaccagcaaggaacggggacatcaggaggaggcggagtcactcacccgtgtcacct
aggagacggcacagagacatatcaccaccgagaaagagacgatctccatctcctcgtcgt
caccgctcaccttcacccagacggcgtaggtcaccatcgcctccacccagacgcaggtcg
ccttcgccccctcctcgccgctattcaccgcccatccagcggcgctacagcccatcgcct
cttcctgctcacaagagacgcccttctcctttacctgctcctccgaagcgtagcagtcca
cgctcgtcttcctctccccctccacgctcacgccgtagccccccgatgtcctcaggacgt
cagagcagcccgcaaggcaggtacccggctgcagggtcgtccccgcagcggcggggccag
tctccgtctcacggcagagccattcgcagggtgtctcgtacacctgagccacggaacttg
cagagagattctcagagcccacggccaatgagaagacagtcatctcgttctcgctctgcc
tcacctgatcatttcccagcatcctcagcggcagcccccgtgtctctcaagaggccggcg
tctgcgtccccctctccgtcccccgctcgctcggccagcggctctcccccacctccggct
aagaaggccagcagtgcctctccaagcccttcccccaacaagaactctgacatagacggc
ggcaagaaaaagaagaaaaagaaggagaagaaacacaagaaggagaagaaacacaagaaa
cacaagaagcacaagaaggagaaaggcggcgccgctccgtcaggggacggccaggaaaac
gtccggacggaggaagagcacgaacccagtcagaaaaaggaatcagagagtgaagtagag
gacagtctggatgatttggagaagcacctgagggaaaaagctctacgttccatgaggaaa
gcccagctgtctcctccccagtcttga
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