Tachysurus vachellii: 132853596
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Entry
132853596 CDS
T09596
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132853596 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132853596 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132853596 (col2a1a)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132853596 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
132853596
NCBI-ProteinID:
XP_060737444
LinkDB
All DBs
Position
11:10834017..10859229
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AA seq
1493 aa
AA seq
DB search
MLRFVDSRTVLLLVATQFILQAVVRCQQEDDQEDLGGCIQDGQHFEDRAVWKPEACRVCV
CDSGAVLCDEVICEELRDCNNPIIPPGECCPICPADQDQTSETFGAKGQKGEPGDIANVL
GPRGPAGPMGPPGEQGPRGDRGPKGEKGIPGPRGRDGEPGTPGNPGPPGPPGPSGPNQPG
LGGNFAAQMAVGFDEKAGGANMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSSGEAGEPG
PSGPMGPRGPPGSPGKPGSDGENGKPGKPGDRGPTGSQGARGFPGTPGLPGIKGHRGHPG
LDGAKGETGAAGAKGETGASGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAG
PPGPVGPSGSPGFPGSPGSKGEAGPTGHRGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDG
IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERG
IVGPQGAPGPIGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLPGAKGAPGDRG
VSGSTGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG
TRGQPGVMGFPGPKGASGEPGKPGEKGLIGSIGLRGLPGKDGETGAAGPPGPAGPAGERG
EQGQPGPPGFQGLPGPSGPPGEGGKPGDQGVPGEGGAPGVVGPRGERGFPGERGSAGAQG
LQGPRGLPGTPGTDGPKGAIGPAGGAGAQGPPGLQGMPGERGTAGISGPKGDRGDTGEKG
PEGAPGKDGSRGLTGPIGPPGPSGPNGAKGETGAIGPSGPAGTRGAPGDRGEVGPPGPAG
FAGPPGGDGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPG
ATGFPGAAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRPGDVGLRGAPGSPG
EKGEPGQEGQHGPLGPPGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSGG
ERGPPGPIGPPGLTGPSGELGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPG
SPGPVGPVGKQGDRGENGPQGPAGAPGPAGARGMAGPQGPRGDKGESGEVGERGQKGHRG
FTGLQGLPGPPGSPGDQGASGPSGPSGPKGPPGPVGPAGKDGANGIPGPIGPPGPRGRSG
ETGTAGPPGNPGPPGPPGPPGPGIDLSAFAGLGQTEKGPDPMRYMRADEASNNLRQHDVE
VDATLKSINSQIEDIRSPDGSRKNPARSCRDLKICHPDWKSGEYWVDPNLGCTADAIKVF
CNMETGETCVKPTTSNIPRKNWWSTKSKAQKHVWFGENMGGGFHFSYGEKIPTPNVASIQ
MNFLRLLSSEASQSITYHCKNSVAYMDDATGNLKKALLLQGSNDVEIRAEGNSRFTYSVL
EDGCKKHTGQWGKTVIEYKTQKTSRLPIVDIAPLDIGGANQEFGVDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgcttagatttgtggactcacggactgtcctgctacttgtagcgacccaatttatattg
caagccgttgtcagatgtcaacaggaggatgaccaggaagacttaggtggctgcatccaa
gatggccagcatttcgaggaccgtgcagtgtggaagcctgaagcttgtcgggtctgtgtt
tgtgactcgggggcagttctgtgtgatgaggtcatctgcgaggagctgagggattgcaac
aatcccatcattccacctggagagtgctgccccatctgccctgctgaccaagaccagact
agcgagacctttggtgcaaagggacaaaaaggagaacctggtgatattgcaaatgttcta
ggaccaagaggaccggctggcccaatgggaccacctggagagcagggaccacgtggagat
agaggccctaagggtgagaagggaattccaggcccaagaggaagagatggtgagcccggc
actccaggtaaccctggacctcctggacctcctggaccatcaggcccaaaccaacctgga
cttggaggaaactttgccgctcagatggctgtaggttttgacgagaaagcaggaggagct
aatatgggtgtgatgcaaggcccaatgggccccatgggtccccgtggtcctcctggtcct
tctggagcacctggcccacaagggttccaaggcagctcgggagaagctggcgaacctgga
ccatctggccctatgggacctcgaggcccaccaggatcacctggaaaacctggaagtgat
ggtgagaatggcaaacctggtaagcctggtgaccgtggacccactggatctcagggagct
cgtggattccctggaacccctggacttcctggcatcaagggacacagaggacacccaggt
cttgatggtgccaagggagagactggagctgctggagctaagggtgagacaggtgcatct
ggtgagaatggcgcccctggacccatgggccctcgtggacttcctggtgagagaggacgc
cctggaccttctggagctgctggtgcacgtggtaatgatggtctacctgggcctgctggt
cctcctggtcctgttggtccttctggttccccaggtttcccaggatcccctggttcaaag
ggtgaggctggacctactggtcatcgtggagctgagggagcccagggaccccgtggagag
gctggcactccaggttctcctggacctgctggagccggtggtaaccctggtactgatggt
attcctggggccaaaggatctgctggtgcccctggtattgctggtgccccaggtttccca
ggacctcgtggcccacctggacctcaaggagctaccggacctcttgggcccaagggtcag
agtggagaccctggtatcccaggatttaagggagaggctggaccaaaaggagagaggggc
attgtcggacctcagggtgccccaggcccaattggtgaggagggtaagagaggaccgaga
ggagagcctggttctgccggccctcttggacctccaggagagaggggagctccaggtaac
cgtggtttccctggtcaggatggtcttccaggtgctaagggtgctcctggtgatcgtggt
gtttctggatcgactggaccaaaaggtggtaatggagatcctggtcgtcctggtgagcct
ggtcttcctggagcaagaggtctcactggtcgtcctggagatgctggaccccaaggaaaa
gttggcccaagtggcgctcctggtgaggatggccgtcctggtccccctgggcctcaggga
actcgtgggcagcctggtgtaatgggattcccaggacccaagggagccagtggtgagcct
ggcaaacctggagagaaaggacttattggcagcattggtctcagaggtttgcctggtaaa
gatggtgagactggagctgctggtcctcctggccctgctggaccagctggagagagaggt
gaacaaggacagcctggccctcctggcttccagggactgcctggaccttctggaccacca
ggagagggtggtaaaccaggtgaccagggtgttcctggagagggtggtgcccctggtgta
gttggaccaagaggtgagcgtggtttccctggtgaaaggggaagtgctggagcacagggt
cttcagggacccagaggacttcctggaactcctggaactgatggacccaagggtgcgata
ggcccggctggtggtgctggtgcacagggtcctcctggtctgcagggtatgcctggtgaa
agaggtactgctggtatttctggacctaagggtgacagaggtgatactggagagaaagga
cctgagggagctcctggcaaagatggttcaagaggtttgacaggccctattggtccacct
ggtccttctggtcccaatggagcaaagggtgaaactggagctattggcccaagtggacct
gctggaactcgtggtgctcctggtgaccgtggtgaggttggaccccctggccctgccggt
tttgctggaccccctggaggtgatggccagcctggaattaaaggagagcagggagagtca
ggccagaaaggagacgctggatcccctggacctcaaggaccttctggagcacctggtcca
gttggcccaactggtgtctctggacctaaaggagctcgtggagcacagggagccccaggt
gctactggtttcccaggtgctgctggaagagttggaccacccggtcctaatggtaaccct
ggcgctgctggccctgctggccctgctggtaaagatggccctaagggagtgcgtggtgat
gctggtcccccaggaagaccaggagatgttggactgcgtggagctcctggttctcctgga
gagaaaggagagcctggccaggagggccagcatggccctcttggtccacctggcccttca
ggtttagctggtcagcgtggtattgttggtctgcctggacagcgtggtgagagaggtttc
cctggccttccaggaccttctggtgagcctggcaaacagggtgctcctggttctggtggt
gaacgaggcccccctggccctattggacctcctggattaactggaccttctggagaactg
gggcgtgagggtaatcctgggtctgatggtcctcctggcagagatggtgctcctggtgtg
aagggtgaacgtggtaacactggtcctattggtgctcctggtgctcctggtgcacctggt
tctcctggccccgttggtcctgtaggcaaacagggagacagaggagagaatggaccacaa
ggacctgctggggcccctggacctgctggagcaagaggaatggctggaccccaaggacct
cgtggagataagggagaaagtggtgaagttggagaaagaggacagaagggacacagagga
ttcactggtctgcagggtcttcctggacctcctggttctcctggtgaccaaggtgcttct
ggaccttccggacctagtggacctaagggacccccaggacctgttggtccagctggaaag
gatggtgcgaatggtatccctggacccattggaccccctggccctcgtggacgatctgga
gaaactggcactgctggtcctcctggtaaccctggaccccctggtcctcctggtcctcca
ggccctggcattgatttgtctgccttcgctgggctgggtcagaccgagaagggcccagat
cctatgcgttacatgcgtgctgatgaggcctccaacaatctgagacagcatgatgtggag
gttgatgccacactgaaatccattaacagccagattgaggatattcgcagccctgatgga
tctcgcaagaaccctgctcgctcctgccgtgacctgaaaatctgccaccctgattggaag
agcggtgaatactgggtggatcctaaccttggctgcactgctgatgctatcaaggtcttc
tgcaacatggagacaggagaaacatgtgtgaagcccactacaagcaatatcccacgcaag
aactggtggagcaccaagagcaaggctcagaagcatgtgtggttcggcgagaacatgggt
ggtggattccatttcagctatggtgagaagatccctactccaaatgtggccagcattcag
atgaacttcctgagactgctatctagcgaggcctctcagagtatcacctaccactgcaag
aacagcgtggcctatatggatgatgccactggtaacctgaagaaggctcttttgctgcag
ggctccaacgatgttgaaatcagagcagagggtaacagccgattcacatacagtgtgctg
gaggatggctgcaagaaacacacaggccagtggggtaagactgtgattgagtacaaaact
cagaagacatctagactgcccatcgtggacattgctcctttagacatcggtggagctaat
caggagtttggagtggacattggaccagtctgtttcttgtaa
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integrated database retrieval system
