Tachysurus vachellii: 132854033
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Entry
132854033 CDS
T09596
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
tvc
Tachysurus vachellii
Pathway
tvc03030
DNA replication
tvc03410
Base excision repair
tvc03420
Nucleotide excision repair
tvc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132854033 (rfc4)
03410 Base excision repair
132854033 (rfc4)
03420 Nucleotide excision repair
132854033 (rfc4)
03430 Mismatch repair
132854033 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvc03032
]
132854033 (rfc4)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132854033 (rfc4)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132854033 (rfc4)
DNA replication proteins [BR:
tvc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
132854033 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
132854033 (rfc4)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
132854033 (rfc4)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
132854033 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
132854033 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_22
AAA_11
AAA_16
AAA_30
Gp44_lid
AAA_14
DUF815
DNAX_ATPase_lid
Mg_chelatase
AAA_24
AAA_5
SLFN-g3_helicase
DEAD
AAA_19
AAA_28
RuvB_N
Cdc6_lid
Kinesin
AAA_7
ResIII
Viral_helicase1
UPF0176_N
KH_DUF2096_C
Motif
Other DBs
NCBI-GeneID:
132854033
NCBI-ProteinID:
XP_060717090
LinkDB
All DBs
Position
1:38953411..38961466
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGSAQSVKAQKDKATASSSGENKRQKPMPWVEKYRPKCVDEVAFQDEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYKQRVLELNASDERGIQVIREKVKR
FAQLTVAGTRQDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLGNQVQQERLEEICEKENLKYSKEGIDALVKVSEGDLRKAITLL
QSTARLSAEKEITESIVIEIAGVVPPKVIENLLQTCYKGNFEKLEIAVKNMIEEGYAATQ
ILSQFHDIIIEEKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQQATQST
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttttgaaaggatctgcacaaagtgttaaagcacagaaggacaaagccaca
gcttcgagcagtggagagaataagcgacagaaaccaatgccatgggtggagaaatacaga
cctaagtgtgtggatgaagttgcttttcaagatgaggtcgttgcagttttgaagaaatcg
ctagagggcgctgatctcccaaatcttctgttttatggcccacctggaacaggaaagacc
tccactattcttgctgctgccagagagctttatggcccagagctttacaaacagagagtt
ctggagctgaacgcctcagatgagagagggattcaggtgatccgggagaaagtgaagcgt
tttgctcagctcacggtggctggtactcggcaagatggaaaatcatgtcctccttttaaa
atcattattctggacgaggcggattctatgaccggtgcggcccaggccgctctcaggcgc
accatggagaaggagtcgcgcacaacccgcttttgtctcatctgtaactacgtcagcaga
atcatcgagcctttgacgtcccgctgctccaaattccgcttcaaacctctcggcaaccag
gttcagcaggagcgtctggaggaaatctgcgagaaggagaatctcaaatacagtaaagag
gggattgatgcgctggtcaaggtgtcagagggagatctccggaaagctataacactccta
cagagcacagccagactcagtgcagagaaagagatcacagagagcatcgttatcgagatc
gcaggggtggttccacccaaagtgattgagaatctgcttcagacttgctacaaaggcaac
tttgaaaaattagagattgctgtgaagaatatgattgaagaaggctacgctgctacacag
atcctcagccagttccatgacattatcatcgaggagaaattgggggataaacagaagtct
gtcatcacagaaaagatggctgttgttgataagtgcttggtggacggagctgatgaatac
ttgcagctgctgaacctctgctctgtgatcatgcagcaggctacacagagcacttga
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