Tachysurus vachellii: 132854209
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Entry
132854209 CDS
T09596
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132854209 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132854209 (snrnp200)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132854209 (snrnp200)
Spliceosome [BR:
tvc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132854209 (snrnp200)
Complex C
U5 SnRNP specific factors
132854209 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
T2SSE
SWI2_SNF2
DUF603
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
132854209
NCBI-ProteinID:
XP_060738471
LinkDB
All DBs
Position
11:16662018..16704410
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEGSDDSEGEEADVGCTLS
ANLGSAGDVMTNKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSDLEKERIMSKMEADQDLSQVLY
QLQETEKEDIIREERSRRERVRKSRVDSDLESMDIDHGQTMASRHLLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSEDETLVAIEKMPKYSQAAFEGFKTLN
RIQSKLFKTTMETDGNLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYVA
PMRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINASQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
IFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMLGKLPDMLN
AEIVLGNVQNAKDAVNWMGYTYLYVRMLRNPTLYGVSHDERNTDPLLELRRMDLVHTAAT
VLEKSNLTKYDKRTGSFQMTDLGRIASHFYITHDSVMTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK
IEKKSFPFERLYDLNHNEIGELIRMPKIGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKSKYAQDEHLVTFFVPVFEPL
PPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFECLYQ
NMFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPM
ESLAEQVFVDWHQKFQVLLNKKVVILTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFLVDEIHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYYTIMKHSPSKPSLVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCSEKELVPFLEKLSDTALKETISNGVGYLHE
GLSMTERRIVEQLFNSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLQDDEGCCVIMCQGSKKDFFKKFLYEPLPVESHLDHRLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLHQLAQKVPHKLNSPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTTEHVKRCTEKGVESI
FDIMEMEDEDRINLLQLSDIQMADVARFCNRYPNIELSYEVVDKDDIKSGSPVVVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVQ
NYTLYFMSDAYMGCDQEYKFSVDVKEADTDKDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttacagcgcgtagcttgcaatacgaatataaagcaaactcgaacttagtt
ttgcaagccgaccgctctctgatcgaccgcacacggcgagatgagcccactggagaggta
ttatctctggttggaaaattggagggaaccaaaatgggcgataagagtcagagaacaaag
ccacaaatgttggaggaaaggagagcaaagagacgaaagcgggacgaggacaggcatgac
attaacaaaatgaaagggttcacccttctgtctgagggcatcgatgatatggtgggtatt
gtttacaagcccaagaccaaagagaccagagaaacttatgaaattctactgagcttcatc
caggctgctcttggagatcagcctagagatatcttatgtggggctgctgatgaagtcttg
gctgtattaaagaatgacaagatgagagataaggaaaggcggagagaggttgagcagctg
cttggccctgcagatgacacacgttaccatgtccttgtcaacctgggcaaaaagatcacg
gactatggaggagacaaggaactacaaaatatggatgacaacatagatgaaacgtatgga
gtaaatgtacagtttgagtctgatgaggaggaaggtgatgaggatcaatttggagaagta
cgtgatgaaggctctgacgacagtgagggtgaggaagcggatgtgggatgtacactgtct
gcaaatctgggaagtgcaggagatgtgatgacaaataaaaagaaagaccttcatccaagg
gatatcgatgctttttggcttcagcgacagctcagtcgtttctatgacgatgctattgtg
tcccagaagaaagctgatgaagttctggagattctcaagactgccagtgacgatagagaa
tgtgaaaatcaattggtacttctgttgggttttaacacttttgatttcatcaaggtgtta
cgccagcacagacgcatgatcctgtactgcaccatgctggcaagtgctcaaagtgacttg
gagaaggagaggattatgagcaaaatggaagcagatcaggatttgtcccaagttctttac
cagttgcaagagactgaaaaagaagacataattcgtgaggaaagatcacgaagagaaaga
gtgagaaaatctcgtgttgacagtgatctggagtcgatggacattgatcatggccagacc
atggcatctcggcatctgctagatctagaggaccttgcctttacccagggcagtcacttt
atggctaacaagcgctgccagctgcctgatggttcattccgtaaacagaggaaaggttat
gaagaggttcatgttcctgcacttaaacccaagcccttctctgaggatgagactcttgtg
gctattgagaagatgccaaagtactctcaagcagcgtttgaggggtttaaaactttgaac
cgcatccaaagcaagctgttcaagactaccatggagactgatggaaatttattggtgtgc
gctcccactggagctggtaaaactaatgttgcactgatggccatgctcagagaaattggc
aagcacatcaacatggatggcaccatcaacgtagatgacttcaaaatcatttatgttgct
cctatgcgttcacttgtacaggaaatggtgggcagttttggaaagcgtttggctagttat
ggcataacagtgtctgagctgactggagatcaccagctttgtaaggaagagatcaatgct
tcccagatcattgtgtgcacccctgagaagtgggatattatcacccggaagggaggggag
cgcacatacacccagctagtgcgcctcatcatcattgatgagatacacttgcttcacgat
gatcgtggaccagttctggagtctctgattgctcggactatccgaaatgtagaactgact
caggaagatgtgcgcctcattggtctcagtgccacactgccaaattatgaggatgtggct
acatgccttcgtgtagaccctgctaagggtcttttctactttgataacagttttcgacct
gtgccattagaacagacatatgtaggaatcacagagaagaaggcaatcaagcgtttccag
atcatgaatgagattgtctatgagaagataatggaacatgctggaaagaatcaggtcttg
atatttgtccattcacggaaggagacggggaagactgcacgagcaatcagggatatgtgt
ctggagaaagacacattaggacttttccttcgagaaggttctgcctcgacagaggtccta
agaactgaggccgaacaatgcaagaatctggagctaaaggatctgttgccatatggattt
gccatccatcatgctggcatgactagagtggacagaacattggttgaggatctttttgca
gatagacatatacaggtactggtgtcaactgctacactggcctggggagttaacttgcca
gcacacactgtcatcatcaaaggcacacaggtgtatagcccagagaaaggcaggtggacg
gagctaggagctctagacattttgcagatgctggggcgtgcaggacgcccacagtacgac
tctaaaggagagggcattttgatcacatcccatggagaactgcagtattacctgtctctg
cttaaccagcagttgcctatagagagtcaaatgttaggcaaactcccagacatgctcaat
gctgagattgtgctgggcaatgtccagaatgctaaagatgcagtgaactggatgggttat
acttatttgtatgtgcggatgctgcgtaacccaacactctatggggtttcccatgatgaa
cgcaacaccgatcccctgctggagttgcgtagaatggatcttgtgcacactgctgccact
gtactggagaagagcaacctgactaaatatgataagaggactggtagcttccagatgacg
gacttgggccgcattgccagtcacttttacatcacacatgattccgtaatgacttataat
cagctgcttaaacctacactcagtgaaattgagctcttcagggtgttctccctctcctct
gaattcaggaacatcactgtgagagaggaggagaagcttgaactacagaaacttctggaa
agggtgccaattccagtgaaggagagtattgaggagcctagtgctaagataaatgtgctg
cttcaggcttatatctcccaacttaagctggaaggttttgctctaatggccgacatggtc
tatgtcacccagagtgcaggtcggcttatgagggctatctttgagattgttttgagccga
ggctgggcacaactcactgacaagaccatgaacctttgcaagatgattgacaaaaggatg
tggcagtctatgtctcctctgcgacagttccgcaaacttcctgaagaagtcatcaagaaa
attgagaaaaaaagctttccatttgaacgactgtatgacctcaaccacaatgaaattggc
gaattgattcgtatgcccaagattgggaaaaccatacataagtatgtgcatcagttccca
aaactggacctggcagtgcatcttcagcctatcactcggtccacacttaaagtggagctc
acaatcacaccagacttccaatgggatgaaaagatacatggatcatcagaggcattttgg
atcttggtggaagatgttgacagtgaagtgatcctacaccatgaatatttcctgctcaag
tctaagtatgctcaggatgagcacctggtcaccttttttgttcctgtatttgagccactg
cctccacagtacttcatcagagttgcctcagaccgttggctttcatgcgaaacccagctg
ccagtgtcatttcgccacctgatcttgccagagaagtatccacctccaacagagctgctt
gacctacaacctcttcctgtatctgccctcagaaatgctgcatttgaatgcctctaccaa
aacatgtttcctttcttcaatcctattcagacccaagtgtttaatgctgtatacaacagt
gatgataatgtgtttgttggcgcccccactgggagtgggaagaccatctgtgcagagttt
gccattctcaggatgctgctgcacaactcagaaggccgttgcgtctacatcacaccaatg
gagtctctggctgaacaagtatttgtggattggcaccagaagtttcaagttcttctgaat
aaaaaggtagtcatactcactggagagaccagcactgacctcaagctactggggaaaggt
gacatcatcatcagcaccccagataagtgggatattttgtcccgccgatggaaacagagg
aagaatgtccagaatgtcagtctttttcttgtggatgagattcatcttattggaggagag
aacgggcctgtactagaagttatctgctccaggatgaggtacatctcctctcagattgag
cgtcccattcgaattgtggcactaagctcatctctgtccaatgcaaaagatgtggcacac
tggttgggttgtagcaccacagcaaccttcaacttccacccaaatgtcaggcctgtgcca
ctggagcttcacattcagggtttcaacgtgagtcacacacaaacccggctactgtctatg
gctaaacctgtgtactacaccatcatgaagcattctccatctaaaccatctttagtgttt
gttccttctcggagacagactcgtcttactgccattgatatattaactttctgtgctgct
gatgtggttccacaaaggttcctacactgctctgagaaggaattggtcccattcctggag
aaactgtccgatactgcattgaaagaaaccatctctaatggtgtgggttatcttcacgaa
ggactctcaatgactgaacgcaggatagtcgaacagctctttaactctggtgctattcaa
gttgtggtggcttctcgttctctttgctggggaactaacatctctgcccatttggtcatt
gtcatggacacacaatattacaatgggaaaattcatgcttacgtggattacccaatctat
gatgtgctgcaaatggtggggaaggccaatcgtccccttcaggatgatgagggctgctgt
gtcattatgtgccagggctctaaaaaggacttctttaagaagtttctttatgagcctttg
ccagttgaatctcatctggatcaccgtcttcatgaccacttcaacgctgagatagtcact
aagactgtggaaaacaagcaggatgcagtggactacctcacttggacttttctttaccgc
cgaatgacccagaaccccaattactacaatcttcagggtatgtctcatcggcatctgtca
gaccacttgtctgaattggtggagaacacactgcaggatctggagcagtccaagtgcatc
agcattgaggatgagatggatgttgcacctcttaatcttggcatgattgctgcatactac
tatattaactataccaccattgagttattcagcatgtctctgaatgccaagactaaaatc
cgtggtctgattgagatcatctccaatgctgctgagtacaagaacataccaatcaggcac
cacgaagacaccctgcttcatcagctagcccagaaggtacctcacaaactgaacagcccc
aagtttaatgacccccatgtgaagaccaacctgctgttacaggcccatttgtcgcgtatg
caattgagtgctgagcttcagtctgacactgaagaaatactcagtaaggctgtacgtctc
atccaggcatgtgtagacgtgctctcaagcaatggctggctgagtccagcattggctgct
atggagctagctcaaatggtgacacaagccatgtggtctaaggattcttatctaaaacag
ttgccacacttcacaacagagcacgtcaaacgctgtacagaaaagggtgtggagagcatc
tttgacatcatggagatggaggatgaggaccgcattaatcttctgcagctgtcagatatt
cagatggctgatgtggcacgtttctgtaaccgataccctaacattgagctctcctatgaa
gtggttgacaaagatgacatcaaaagtggcagtccagttgttgttcaggtgcagttagag
agagaggaagaggttacaggacctgtcattgctccactgtttccacagaaacgtgaagag
ggctggtgggttgtgattggagaccccaaatctaacagtcttatctcgatcaagagattg
actctgcaacaaaaagcaaaggtaaaactggactttgtggcccctgttgttggtgttcag
aactatacactgtatttcatgagtgatgcttacatgggttgtgaccaggagtacaagttc
agtgtggatgtgaaggaggcagacactgacaaggacagtgactcagattga
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integrated database retrieval system
