Tachysurus vachellii: 132854385
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Entry
132854385 CDS
T09596
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132854385 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132854385 (cnot6l)
Enzymes [BR:
tvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132854385 (cnot6l)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132854385 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132854385 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_R13L1-DRL21
LRR_LRWD1
LRR_NXF1-5
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
132854385
NCBI-ProteinID:
XP_060738719
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All DBs
Position
12:complement(20007357..20023042)
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AA seq
556 aa
AA seq
DB search
MPKEKYEPPDPRRLYTIMSAEEAASGKKSHWAELEITGDHCFWTGRVRNLSSSLWTLTHL
TALHINNNNLSRLPPEIAKLPHLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNCLRVLP
YELGRLFRLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLR
ERDQMMPTAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITSCDADIISL
QEVETEQYYTFFLETLKERGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFALVQKH
TVEFNQVAMANSEGSEVMLNRVMTKDNIGVAMLLEVKKELFTGGLKPPTEKQLLLVANAH
MHWDPEYSDVKLIQTVMFLSELKSIAEMALSSTGSTSASSDSTSFPIVLCADLNSLPDSG
VVEYLSNGGVAENHKDFKELRYSECLTNFSCNGKNGKPDGSITHSFQLKSAYESNLMPYT
NYTYDFKGVIDYIFFSKTHMNVLGLLGPLETQWLVDNCIIGCPHPHVPSDHFSLLAQLEY
HPPLSSLNGLNLPIHR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggagaaatatgagcctccagacccgcgcaggctgtacactatcatgtcggca
gaggaggcagccagtgggaagaagtcgcactgggccgagttagagattaccggagatcac
tgtttttggacagggcgggtgagaaacctgagcagttcgctatggacactcacccatctg
accgctctgcacatcaacaacaacaacctcagccgactccctcccgaaatcgctaagctc
cctcacctggtctacctgaacctgtcctccaacaaactacgcagcctaccagcagaactc
ggcaacatggtttctctcagggaattgcttttgaacaacaactgtttacgggttttgcct
tacgaacttggacggctgtttcgcttacaaactctcggtctcaaaggtaacccactgtcc
caggatatactcaacctctaccaggagcctgacggaacaaggaaactgttgaattacatg
ctagacaatctcgcagtccatccagaacaactcccccagagaccttggattacactgagg
gaacgagaccaaatgatgcccacagctgttttcacagtaatgtgctacaacgtgctttgt
gataaatatgcaacgaggcagctgtacggctactgtccttcctgggctctcaactgggag
tatagaaagaaaggcatcatggaggagatcaccagctgtgatgctgacattatcagtttg
caggaggtggaaactgagcagtactacacattttttctggaaactctaaaggaacgtgga
tatgacgggtatttttgtccaaagtctcgtgccaaactcgtatctgagcaggaaaggaag
cacgtggatggttgcgctgtgttcttcaaaacagaaaaatttgcactggttcagaaacac
acggtggagtttaatcaggtggccatggccaactccgaaggctcagaagtcatgctgaat
cgggtgatgaccaaagacaacatcggagtagccatgctgctagaggtgaagaaagagctg
tttactggagggttgaaaccacctacagaaaagcagcttctattggtggctaacgctcac
atgcactgggaccctgaatactcagacgtcaaactcatccagaccgtcatgttcctgtcc
gagttgaagagcatcgctgagatggcattaagctccactgggtccacgtcggccagctca
gattccacctccttccctattgtactgtgtgctgacctcaactcgcttccagactctggt
gtagtggaatacctgagcaatggcggagttgctgagaatcacaaagacttcaaagagcta
cgctacagcgaatgtctgaccaacttcagctgcaacggcaagaacggcaaaccagacggc
agcatcacccacagtttccagctgaagagcgcctatgagagcaatctgatgccttacact
aattacacctatgactttaagggcgtgattgattacattttcttctccaagactcacatg
aatgtgctgggcctgcttggtcctcttgagacacagtggttggtggataattgcatcatc
ggctgtccccacccacacgtcccctctgatcacttctccctcctggctcagttggagtac
caccctcctctgtcgtccctcaatggcctgaaccttcccatccacaggtag
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