Tachysurus vachellii: 132855284
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Entry
132855284 CDS
T09596
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132855284 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvc03021
]
132855284 (smarca2)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132855284 (smarca2)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132855284 (smarca2)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
132855284 (smarca2)
Chromatin remodeling factors
BAF complex
132855284 (smarca2)
PBAF complex
132855284 (smarca2)
GBAF(ncBAF) complex
132855284 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
SnAC
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
132855284
NCBI-ProteinID:
XP_060740117
LinkDB
All DBs
Position
12:19531715..19575137
Genome browser
AA seq
1577 aa
AA seq
DB search
MATPTDTSVGMSHPGPSPGAGLSPGPILGPSPGPGPSPGSVHSVMGPSPGPPSVPHSMQS
QGSGDYSQEGMHPMHKPMEGMHEKGMGDEMHYGQIKGVGMRSLHSGMGPPQSPMDQHSQG
YISPHPSPMGSVPEHVSSPMSGGGPTPPQMSQAQPGPMMPMEPQAMGQQGRSHSTFSPVQ
LQQLRAQILAYKILGRGQPLPDNLQLAVQGKRGLPTMQQQPVNTGPYNRTPGMPVPHGSP
ASGPSSTAGMQTHAPSTGPKPWAEGQGAEACSSSQKLPVPAPSGRPSPVPPQAPTATQAM
PSTSLTPQSQSQPQAQQPQQQQGPGQTSLIIQLQQKQNRITPIQKPQGLDPVELLQEREY
RLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRKDTTLET
ALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRS
ISAKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAY
LLQQTDEYVANLTTLVYEHKAAQAAKEKKKRKKKKKKEDGDTEGLGAIGPDGEPIDESSQ
MSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDEEE
MVSRAETEEKKTFDPNSDEVSEGAAKHIIESAKQDVDDEYSVQAGQPSLQSYYGVAHAVI
EKVEKQSSLLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEY
KRLNGPFLIIVPLSTLSNWVYELDKWAPSIVKIAYKGMPSMRRSLVPQLRSGKFNVLITT
YEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTI
MQLKKICNHPYMFQHIEESFAEHLGFPNGIINGPDLYRASGKFELLDRILPKLQVTNHRV
LLFCQMTSLMTIMEDYFSYRNFLYLRLDGTTKSEDRAALLKKFNDEGSQYFIFLLSTRAG
GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSGHERRVFLQAILEHEEQNEEEDEVPDDETLNQMIARNEDE
FELFMRMDLDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEKEKMFPRGSR
HRRDVDYSDTLTEKQWLRAIEDGNLEEMEEEIRLKKRKRRRHVDKGSRREDGDKAKKRRG
RPPAEKLSPNPPKLTKQMSAIIETVINYRDGSGRQLSEVFVQLPSRKELPEYYELIRKPV
DFKKIKDRVRNHKYRSLGDLEKDVMLLCHNAQTYNLEGSQIFEDSIVLQSVFRSARQKIA
KEESEDDSNEEDDEEESDAESKSVKLKIKLSKREERSQERGKKRPSRVKAKPVVSDDDSD
EDQEENEQSEGSHTEDE
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atggccaccccaactgatacttcagttggaatgtcccaccctggaccctcccctggtgca
ggcctttcccctgggcccattttaggccccagtcctggaccaggcccctctccaggctct
gtccacagtgtgatgggcccaagcccaggacctcccagtgtacctcacagcatgcagagc
caggggtcaggagactattctcaggagggcatgcatccaatgcacaagcccatggaagga
atgcatgagaagggaatgggagacgaaatgcactatgggcagatcaaaggtgttgggatg
agatccctgcacagtggcatgggcccaccacagagtccaatggatcagcacagccaagga
tacatatcacctcacccttccccaatgggctccgtacctgagcatgtatccagccccatg
tctggagggggtcctacaccaccacagatgtctcaggctcaaccaggccccatgatgccg
atggagcctcaggcaatggggcagcagggtcgtagccactcaaccttcagccccgttcaa
ttgcagcagctccgcgctcagattctggcttacaagatcttgggccggggacagcccctg
cctgataacctgcaactggctgtgcagggtaagaggggccttcccacaatgcagcagcag
cctgttaacactggaccttacaacaggactccaggtatgcctgtaccccacggaagccct
gcatcaggcccaagttccactgcaggcatgcagacacatgctccaagtaccgggccaaaa
ccctgggcagaaggtcaaggcgctgaagcctgtagcagctcccagaagctccctgtgcca
gcccctagtggcagaccctctcctgttcctcctcaggctcccacagccacccaggccatg
cccagtacatctctcacaccacagtcccaatctcaaccccaggcccagcagccccagcag
caacaaggccctggacagacctcgctaattatccagctgcagcagaagcagaaccgcatc
acacccattcaaaagccgcagggcctggacccagtggagcttctacaagagcgagagtac
aggctgcaggccaggattgcccacagaattcaagagctggaaaatttgcctggttctttg
cctcctgacctgagaactaaagcaacagtcgagctgaaggccttaaggcttcttaatttt
caacgtcagctgcggcaggacgttgtggcttgtatgcgcaaagataccacattggagacg
gcgttgaattccaaggcctacaagcgcagtaagaggcagacacttagggaggcacgcatg
acagagaagctggaaaagcagcagaaaattgaacaggagagaaaacgccgccagaaacat
caggaataccttaacagcatcctccagcatgctaaagacttcaaggagtatcaccgttca
atctcggcaaagattcagaagttgtccaaggctgtggccacatggcatgccaacacagag
agggagcagaagaaggagaccgaaagaattgagaaagagagaatgagaaggctgatggca
gaggatgaagagggctacagaaagctgattgaccagaagaaggacaagcgtctagcttac
ctgctccagcaaaccgatgagtatgtggccaacctcaccaccctggtctatgaacacaag
gctgcccaggctgccaaggaaaaaaagaagaggaagaagaagaagaagaaggaagatgga
gataccgaagggcttggagcaatcggacctgatggggagcccattgatgagagcagtcag
atgagtgaactcccagtcaaagtcattcagacagagacggggaaggtgctacagggcacc
gatgctcccaagtctagccaactggaggcctggcttgagatgaatcctggctatgaagtg
gcaccgaggtcagacagtgaagagagcggttctgagtttgaagaggaggatgaagaagaa
atggtctctcgggcagaaacagaggaaaagaaaacttttgatcccaatagcgatgaggtg
tctgaaggagcagcaaaacacatcatagagtcggccaagcaagatgtggacgatgagtat
agtgttcaggctggacagcccagcttgcagtcttactatggagtagcccatgctgtcatt
gagaaggtggagaagcagtcatccttactgatcaacggcacactcaagcaataccagatc
caggggctggaatggatggtgtccctgtacaacaataacctaaatggcattttggcagat
gagatggggctggggaagaccatccaaaccattgcgctcatcacatacctaatggaatac
aagagacttaatggtccatttctgatcatcgtgccattgtcgactttgtccaactgggtt
tatgaacttgacaagtgggctccatccattgtgaaaatagcctacaagggcatgccatcg
atgagaaggtcattagtgcctcaacttcgtagcgggaagttcaacgtcctcataaccacc
tatgagtacattataaaggacaaacagattctagctaagatccgctggaagtacatgatt
gtggatgaaggtcatcgtatgaagaaccaccactgcaagcttacacaggtgttgaacaca
cattatgttgccccacgcaggcttttgctgaccggtactcctctgcagaacaaactacct
gagctttgggctctgctcaactttctccttcccacaatctttaaaagttgcagcaccttt
gagcagtggttcaacgctccatttgccatgactggggaaagggtggatctaaatgaagag
gagaccatcctgatcatccgccgtcttcacaaagtgctgcgccctttcttgcttcgtaga
ctaaagaaggaagttgagtctcagctgcctgaaaaggtggagtatgtgatcaaatgtgac
atgtcagctatccagaaagttctatataggcacatgcaagccaaaggcattttgcttaca
gatggctcagagaaagacaagaagggtaaaggaggggcaaagactctgatgaacaccatc
atgcagctgaagaagatttgcaaccacccttatatgttccagcacattgaggaatctttt
gctgagcacttaggcttcccaaatggcatcatcaatggtcctgatctgtatcgtgcttcg
ggaaaatttgagctgctggaccgcatcctgcctaagctgcaggtcacgaatcacagagtg
ttgctcttttgtcagatgacttccctaatgaccatcatggaggactacttctcctaccgc
aacttcctctacctacgtctagacggaacaaccaagtccgaagatcgtgctgcactgctg
aagaagtttaatgatgagggatcacagtatttcatctttctgctgagcaccagggcaggg
ggtttgggcctcaacctgcaggctgctgacactgttgtcatctttgatagtgactggaat
ccccaccaggatttgcaggctcaggaccgtgctcaccgaattggacagcagaacgaggtg
cgcgtgctgcgtctctgcaccgtcaacagcgtagaagagaagatcctcgctgctgccaaa
tataaacttaatgttgatcagaaggtcatccaggcaggcatgtttgaccagaaatcctct
ggtcacgagcgcagggttttcctgcaggccatcttggaacacgaggagcaaaacgaggag
gaagatgaagttccagatgatgaaacgttaaatcaaatgattgcccgtaatgaggatgaa
tttgagcttttcatgcgcatggacctggatcgccgtcgcgaagatgcacgtaaccctaag
cgtaagcctcgtctaatggaggaggacgagctaccgtcttggataattaaagacgatgct
gaggtggagcggctcacctgtgaggaagagaaagagaagatgttcccccgtggatcacgt
caccgcagggacgtggattacagcgacacgctgactgagaaacagtggctgagagccatt
gaagatggcaacctggaggagatggaagaggagatccgtctgaagaagcgcaagcgcagg
agacacgtagacaaaggcagccgacgtgaggacggggacaaggcgaaaaagaggagggga
cgacctccggccgaaaagctctcgcccaaccctcccaaactcaccaaacagatgagtgcc
atcattgagactgtcatcaactacagagatggatcaggccgtcagctcagcgaggttttt
gtacaactgccttccaggaaagagctcccagagtactacgaactgataaggaaaccagtg
gacttcaagaagatcaaggacagagtgcgcaaccataagtacaggagcctgggagatttg
gaaaaagacgtaatgctcctctgccacaatgctcaaacctacaatctagaaggctctcag
atcttcgaggactccatagtactgcagtctgtatttaggagtgctaggcagaagattgcc
aaagaggagagtgaggatgacagcaatgaggaagatgatgaggaggagtcagatgctgag
tctaagtcagtgaagttaaagatcaagctgagcaagcgggaagagcgcagccaagaaaga
gggaagaagcggccgagccgggtcaaggccaagcctgttgtcagtgacgatgacagtgat
gaggatcaggaagagaatgagcagtctgaaggcagccacacagaagatgagtga
DBGET
integrated database retrieval system
