Tachysurus vachellii: 132855496
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Entry
132855496 CDS
T09596
Symbol
pcdh12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tvc04515
]
132855496 (pcdh12)
Cell adhesion molecules [BR:
tvc04515
]
Cadherins
Protocadherins
132855496 (pcdh12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
LST1
Motif
Other DBs
NCBI-GeneID:
132855496
NCBI-ProteinID:
XP_060740447
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Position
13:18924871..18938541
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AA seq
1165 aa
AA seq
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MLQFWLLFLAIFYFCEGQYLDKAPIIIQYNIWEEQPAGTRVGCLLDNLRQNGETGSLEDF
RIVEHGQALPFSVAKRDGVVLTLAQLDREELCRGAEQCELAFSVLYRKGGAVHFLRVRVE
VMDMNDHSPVFPNPVQEVEISETVGLRMRIPLDRAEDPDAGSNGLQTYSLSPSLHFSLDI
RPSGGAKQPELVVIKELDREMESSFELTLFAFDKGNPPKSGSTKVKVIVLDSNDNSPMFE
ENAPIVDLSEDAVQGTVVINLHATDPDQGANGEVVYSLSKHAPLDVQRLFNVDPQTGAVV
LKGLLDFEEKRLYEVDIQAKDRGHNAIPSHCKMQVRVQDVNDNAPRIHITWTPPDSPVAT
VSEGATNETFLALVMVSDADSGLNGAVKVQIQQGSGPFRLKQIHGDNYIIVTNGSLDRER
QVKYNITLLAQDSGVPSLSCVRHLTVHVLDENDNAPVFPKTLYTGVFNENNKPGYHVLTL
EAHDVDLDLSGQVSYAIRELNELGTPTAFFSVHPTSGAVIAQQSLDYEESPTYSFVVEAV
DHGYPPMTSSATVLIMIEDVNDNYPIIREPLPKKGVAVVSIPVNADKGEIVTELKNKVHG
IIHPLSNHSSQYRLEGFLATTILASDSDSGFNGNLQFKIIAGNPSRLFWLDETTGQLYVN
TTNATELIGKAFKVVIAVSDMGTPPLVTQTTLDITFINLRDHLKNSAPGQQAQFSFTMLL
AVCIGGTCLLLLLVVALVTTFCRPEKRDTRAYNCRQAESTYTSHPRRPQKHIQKTDIQLV
PVLRGRKCETPEEESQPLSSSSSLPEEPHKEGQLSLSPTLALLVQSQTFAENNGTLPFTQ
SKTLRKPGSIECPHTPTTPYRTLRKARIPSSSLSLHSQSNTLRRHKPEEVNTSTDSQAVA
SGPFTQATLRRAKNPERNERPQEQDHRQILRNLVRLSMAALGENSLELSSASPEVQQVSQ
LLSLLHQGQFQPRPNFRGNKYSHRGGRSGPQDADWQSTKDSGHGESEPGDVDWEAGRDSP
VDPLLEEGLTNLLSNYDDVFLDTPDPAWMARLSLPLTSDYHDNLYVPDGLPPSEDQSSTL
GPNDSAAFSTFGKAPEKNGALGGETLLSEVTTLFEMLMTQKADAQPRSDILYRLSAAYRR
SIGLDGHLGPNEKSPLIRCTTPNRY
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagttttggcttctgtttctggccattttttatttctgtgagggtcagtatctt
gacaaagctcccatcattatccagtataatatctgggaggaacaaccagcaggcacaagg
gtgggctgcctgttggacaacctacgtcagaatggagagactggatcactggaggacttc
cggattgtggagcatggtcaagctctaccattctctgttgccaaaagagatggggtagtg
ttgacactggcccagctggaccgggaggagttgtgtcgtggtgctgaacagtgtgaactg
gcctttagtgttctctataggaaaggtggagcagtacacttcctgcgtgttagagtggag
gtgatggacatgaatgaccacagtcctgtcttccctaacccagtgcaggaggtggagatc
tcagaaactgtaggcctgaggatgcgtattccattggaccgtgcggaggatccagatgca
ggttccaatggcctgcaaacctattctctttctccaagtcttcacttttctttggatatc
cgtccctctggaggtgccaaacagccagaattggtggttattaaagaactggaccgggag
atggaatcttcttttgaattaacattgtttgcttttgataaagggaacccacccaaatct
ggcagcaccaaagtcaaagtcatagtcttggactccaatgacaacagtcctatgtttgag
gaaaatgctccaatagttgacctttctgaagatgcagtacaaggcacagtagttatcaac
cttcatgctacggatcctgaccagggtgctaatggagaggttgtgtactcactcagtaaa
catgccccattagatgtacagagactttttaatgttgatcctcaaacaggtgctgtagtt
ttaaaaggccttttagactttgaggaaaagagattatatgaggtagacatacaagcaaag
gatcgtggtcacaatgctatcccatcccactgcaaaatgcaagtaagggttcaagatgtc
aatgacaatgctcctcggatacacattacgtggactcccccagattctcctgtggcaact
gtttcagaaggggcaacaaacgagacctttctagctcttgtgatggtgtctgatgctgat
tcaggtctaaatggggcagtgaaagtccagatacagcaaggatcaggcccattccgtctc
aagcaaatccatggagacaactacataattgttactaatggaagcttagatcgggagcga
caggtgaagtataatattacacttcttgctcaggacagtggtgttccttctctgtcttgt
gtaaggcatctgactgtccatgttctggatgaaaatgacaatgcaccagtatttcccaaa
actctctacactggtgttttcaatgagaataataaacctggatatcatgtcttgactctg
gaagcccatgatgttgacttagaccttagtggacaagtgtcgtatgcaattagagagtta
aatgaacttggcacaccaactgcttttttctcagtccatccaaccagtggggctgttatt
gctcagcagtcattagactatgaggaatcaccgacatactcctttgttgttgaagcagta
gatcatgggtaccctccaatgaccagtagcgctactgtgcttattatgattgaggatgtt
aatgacaactatcccatcatcagggaaccacttcccaagaaaggtgttgcagtagtgagc
attccagtaaatgcagataaaggagagattgtgacagaacttaagaacaaagttcatgga
atcatacatccactgagcaatcattcttcccaatacaggcttgaaggatttttggccaca
acaatattagcaagtgactctgactctggtttcaatggaaatctccaatttaaaataata
gcagggaatccgtccagactgttttggttagatgaaacaacagggcagttatatgtgaac
accaccaatgctacagaattgattggcaaagcttttaaagtggtcattgcagtgtcagac
atgggaacacccccacttgtcacacagacaacactagatattacattcatcaatcttcgt
gaccaccttaagaactctgctcctggacaacaggctcaatttagcttcacaatgctttta
gctgtctgcattgggggaacctgcttgcttttgctcctagttgttgctttggttaccaca
ttctgtcgcccagaaaaacgagacactcgtgcttacaactgcagacaagctgaatctacc
tacactagtcaccctcgcagaccacagaaacacattcaaaagacagatattcagctggtt
cctgttctaaggggtagaaagtgtgaaacacctgaagaggagtcccagccactctcatct
agttcttctcttccagaagaacctcacaaagaaggccagcttagtctttcaccaacactt
gctctcctggtacaaagccaaacttttgctgaaaataacggtacactgccatttacacaa
agcaagacactcaggaaacctgggagcatagaatgcccacatacccctacaacaccctac
cgaaccctgcgcaaggcacgaatcccttcctcatccttgtccttgcactcacagtccaac
acactgagacgccataagcctgaagaagtaaatacatcgactgactcccaagctgtagcc
tctggtcctttcacacaggccactttgaggagagcaaaaaacccagaaagaaatgaaagg
cctcaggaacaagaccacagacaaatactacgaaatttggtgcgcttatccatggctgct
cttggagaaaactcacttgagctatcttcggcttcacctgaggtgcagcaggtgtctcag
ctattgtctctgctacatcagggccagtttcagcctcgaccaaatttccgtggcaacaaa
tattcccatagaggaggccgatccggaccacaggatgctgattggcaaagtactaaagac
agtggccacggggaaagcgaacctggagacgtggactgggaggcaggcagagactcccca
gttgaccccttgttggaggagggcctaaccaacctgctcagcaactatgatgacgtgttt
ttggacaccccagacccagcgtggatggctcggctgtcccttcctctgactagtgattat
catgacaacctttatgtccctgatgggctaccaccctcagaagaccagagttctacttta
ggcccaaatgactctgccgccttctctacctttggtaaagccccagagaagaatggggct
ttaggaggtgaaactctgctttcggaagtcaccacactgtttgagatgctaatgacacag
aaggctgatgctcagccacggtcagacatcctctacagactttctgcagcttatcgtcgc
tctatcggcctcgatggccacctagggccaaatgaaaaatctcctttaatacgttgcacc
actccaaaccgttactga
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