Tachysurus vachellii: 132856732
Help
Entry
132856732 CDS
T09596
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tvc00535
]
132856732
Proteoglycans [BR:
tvc00535
]
Extracellular matrix (ECM) proteoglycans
Others
132856732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
NDNF
Motif
Other DBs
NCBI-GeneID:
132856732
NCBI-ProteinID:
XP_060742437
LinkDB
All DBs
Position
14:5351060..5426870
Genome browser
AA seq
1867 aa
AA seq
DB search
MQVMGIRALSPLLLLALTSLFIKPTHGQVPAPRRLRFKELGSGKLSVSWKEPKGEFDSYR
FIYSSGPGEQERGVQVLKQDAKAVITDFDSRKEYSFKVYTVSGSQLSKPLLGTYKASRSE
VSDRDPLTPSVKPDSEPEQGNEIIEEISFMCKTPAIADIVILVDGSWSIGRFNFRLVRTF
LENLVTAFSISSDQTRIGLAQYSGDPRIEWHLNTHSTKEDVINAVKNLPYKGGNTLTGLA
LMYILENSFKPESGSRTDVPKIGILITDGKSQDDVIGPAQSLRDAGIELFAIGVKNADEN
ELRMIASPPEETHVYNVADFNFMSSIVEGLTRTVCQRVDYLNREIKGESTSNTIPDAPSD
LVTSEVTARSFRVSWTHAPGTVEKYRVVYHASRGGKPEEAVVNGDQNSVILQHLNSVTEY
QVAVFAVYSNSASEGLRGSETTLALPMVNNLYLYDITHNSMRVRWVPAEGASGYMILYAP
LSDQGSSDEKEVKISESVTEIELDGLTPATEYTVTVYAMYGDEASDPQTGQETTLSLSPA
RDLRITDVTHNSAKLSWVAASRKVKGYRIMYVKTDGDQTNEVEVGRVTTKLLSDLTSLTE
YTVAIYAIYDEGQADPLTESFTTRSVPVPVSVRSSDVTTDSFRVSWQHAASGISLYRLTW
KPVKGGDTREMVIGGNLNSYVILGLKPQTEYEVALSAIYKDKAESETVMLIETTVARTTT
AATTTTTTAVAKMGVRGLQLSDFTTFSMLSSWELLGSNVYQYRVSYVSTRGDRAEQVIMV
PGNQNSVVLQPLMSDTEYRVSVTAVYADGDGPASTRSARTLPLLAPKNLKVSEEWFNRFR
ITWDTPPSPTMGYRVIYQPISVPGRALETFVGDDVNTMLILNLLSGTEYSVKVIATYTTG
SSDALTGKAKTLYLGVTNLNTYQVRVNSMCAQWQAHSHATRYRVTIESLLNGQKQEVSLD
GSDNKHCFSDLNPNTQYKISVYALLQEVEGPAVTTIQKTLPVPTIPPTRPPTTTPLPTIP
VAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTAGALDEIGPGGTQVAIAQFSDD
ARTEFKLNSYENKESLLDAIQRISYKGGNTKTGRAMQHVKDAVFTRAGGTRRGVPKVLVV
LTDGRSQDDVNKISHEIQMEGYIVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFRK
IEEKLITFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVENLYSNVAGVSMEPGTFNSFS
SYRISSDALLAQPTRFIHPEGLPSDYTITVVFRLLPQTPVEPFALWEILNKEKEPLVGVI
LDNAGKTLTFFNNDYRRDFQTVTFEGPEIKRLFYGSFHKLHIAVSKTLAQVLVDCKLAGE
KPINAAGNITTDGMEVLGRMVRSRGDRDNSAPFQLQSFDIVCSTSWARRDKCCDLPSLRK
EADCPALPRACTCTQDSKGPAGPPGPPGGPGIRGTRGDRGEPGPVGPVGPVGESGVPGPQ
GPPGPQGLSGRSIRGPPGGPGEKGEKGEAGLRGTQGIPGNSGSPGRDGPPGPRGLPGNDG
PQGRAGPPGNIGGPGAPGAPGQNGPPGPTGDQGPRGLAGSKGDKGERGDAQSTSSVQAIA
RQVCEQLIQTHMARYNSILNHIPRQQAASVRTVPGPPGEPGRAGPPGQQGEQGPPGRPGF
PGTNGENGQPGVRGLPGDKGEKGSSGVGVQGPRGPSGPPGPPGEGRSGSPGPSGRPGNPG
GSGRPGIPGPVGPPGPPGYCDPNSCGMRFFHHEVTDRDIPVAPMQPNPYQTYGPDEVEGG
EEDPYAGYGTHHSYYQPSYPEPHPVGPEEPIAIVDVEEELRSPGIQRLTRSTEEQEHNRE
TRTSAHF
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgatgggcataagggcactaagtccacttcttctcctggcattaacatcattg
ttcatcaaaccaacacatggacaagtgcctgctcccagaagattgcgttttaaggagcta
ggctcaggcaagctcagtgtgtcctggaaggaaccgaaaggagagtttgacagctacaga
ttcatctacagctctggtccaggagaacaagagagaggcgtgcaggtgttgaagcaagac
gccaaagctgtgatcactgactttgatagccgtaaagagtacagcttcaaagtctacacc
gtcagcggcagtcagttgagcaaaccactcctggggacatataaagcttcaaggtcagag
gtgagtgaccgtgacccactgactcccagtgtaaagcctgacagcgagcctgagcaggga
aatgagatcatcgaagagatttcattcatgtgtaaaactccagccattgctgatattgtg
attctggtggatggctcttggagtatagggcgctttaatttccgcctggtacgtacgttt
ctggagaacctggtgacagcattctccatcagctcggaccagacacgtatcggattggct
cagtacagtggtgacccaagaattgagtggcacctcaatacacactccacaaaagaagat
gtcatcaacgctgtgaagaatttgccatataagggaggaaacacactaacaggtctagcc
ctgatgtatattcttgaaaacagctttaagcctgagtctggatccaggacagatgttcca
aaaattggaatcctaatcacggacgggaaatctcaggatgatgtcatcggccctgcccag
agtctcagggatgcaggaatagagctgtttgccattggtgtgaagaatgctgatgaaaat
gagttgaggatgattgcatctcctccagaagagacccacgtgtataatgtggctgacttt
aatttcatgagctcaatagtggagggtttgaccagaaccgtgtgtcagcgtgtggattat
ctcaacagagagatcaaaggtgaatccacgtccaatacaattccagatgcacccagtgac
cttgtgacctctgaggtcacagccaggagtttccgtgtctcctggacccatgctcctgga
acagtggagaagtatagagtggtgtaccatgcgtccagaggtggcaaaccagaggaggcg
gtggtgaacggtgatcagaactctgtaatcctccaacatctgaactctgtgactgagtac
caagtggctgtctttgctgtctacagtaactctgccagtgaaggtctgagaggcagcgaa
accacattggccttgcccatggtgaataacttgtatctgtatgacatcacgcacaatagc
atgcgggtgcgatgggtccctgcagaaggggcttctgggtacatgatcctgtatgcccca
ttgagtgatcaaggctcatcggatgagaaggaggttaaaatatcagagagtgtaactgag
attgagctagatggtctgactcctgcaaccgagtacactgtcacagtctatgccatgtat
ggagatgaagccagtgacccccagacagggcaggagacaacactttctctcagtccagca
cgagacctacgcatcactgacgtgactcacaattcagctaagctcagctgggtagccgcg
tctcgtaaagtgaaaggctaccgcatcatgtacgtgaaaacagacggagatcagaccaat
gaggttgaagtcggtcgagtcaccacaaagttgctaagtgacctcacctctttgacagag
tacacagtggctatctacgccatctacgatgagggacaagccgatcccctgacagagagc
tttacaactaggagtgttcctgtccctgtgagtgtgaggagcagtgatgtgaccacagat
agtttcagagtaagctggcagcatgcagcgtctggcatttccctctacagactcacctgg
aagccagtcaaaggaggagacaccagagagatggtgattgggggtaatctaaattcctat
gtgattttgggtctgaagccacaaactgagtatgaggtcgctctctccgccatctacaaa
gacaaagctgagagtgagacagtcatgctcattgaaactacagttgctagaacaacaaca
gcggcgactaccaccacaactacagcagtggctaagatgggtgtgcgaggtctgcagctg
agcgattttactacattcagcatgttatcatcgtgggaactgctcggctcaaatgtgtat
cagtatagagtatcctacgtttcaacacgtggtgacagagctgaacaagtgatcatggtt
cctggcaatcagaactcggtggtgttgcagccgttgatgtcagacacagaatacagagtg
agtgtgacagctgtttatgcagacggagacggaccagccagtacacgctccgctcgcaca
ttgcctcttcttgctcctaagaacctgaaggtgtcagaagaatggttcaatcgcttccgt
atcacctgggacacgccaccatctcccactatgggatacagagtaatctaccagcccatc
tcagtaccaggccgggccctggagacattcgttggtgatgatgtaaacaccatgctgatc
ttaaacctgttgagtgggacagaatacagtgtaaaggtcattgccacgtacaccacaggc
tccagcgacgctctcactggcaaagccaaaacactgtacctgggcgtaacaaatctgaac
acctatcaggtacgagtgaacagtatgtgtgctcagtggcaagctcattctcacgccacc
cggtaccgtgtgaccatcgagtccctgctcaatggccagaagcaggaagtgagcttggat
ggctctgacaacaagcattgctttagcgacctgaatccaaacacgcaatacaaaatcagt
gtttatgctctgctacaggaggtagagggccctgctgtcaccactatccagaaaacactc
ccggtgcccaccattcctcccaccaggcctcccaccaccacgccgctccccaccatccct
gtcgctaaggaggtttgcaaagccgcaaaggcagatcttgtgtttttggttgacggctca
tggagcatcggcgatgacaacttcctaaaaatcatccgcttcctgtacagcacagcagga
gcactggatgaaattggacctggaggcacacaggtagccatagcccagttcagcgacgat
gctcgcaccgagtttaagctcaactcatatgaaaacaaggagagtctcctggatgctatt
cagaggatttcatataaaggaggcaacactaaaacaggtagagctatgcagcatgtgaag
gatgcagtcttcaccagggccggaggaaccaggaggggtgtacccaaagtgctagtcgta
ctaacggacggacgttcccaagacgacgtcaacaaaatctcccatgagatacagatggaa
ggttacatcgtgtttgcaatcggttttgccgacgccgactacggagagctggtgagcatc
gccagcaagcccagcgaaaggcacgtgttctttgtggacgacctcgacgcttttcgaaag
atcgaagagaaactcattacgtttgtctgtgaggctgcgacggcgacttgtccttctgta
gcaatgagcggcagcacgttaccaggatttagaatgatggaaatgtttggactggtggag
aatctgtacagcaacgtggcaggtgtttccatggagccaggaacctttaacagctttagt
agctacagaattagcagtgatgccctgctggcacaacccaccaggtttatccaccccgag
ggtctgccatctgattacacaatcactgtggtgttccgcctgctgccccaaacccccgtg
gagcccttcgcattatgggaaattctcaataaagaaaaggaacccttagtgggtgtcatc
ctagataatgcagggaagaccctgacattcttcaataacgactacaggagagattttcag
actgtaacatttgagggtcctgagattaaacgactcttctatggcagtttccacaagttg
catatagcggtgagtaagacattggcacaagtgctggtggactgtaaactggctggagag
aagcccattaatgctgctgggaacatcaccactgacggcatggaggttttggggagaatg
gtccgatcccggggagatagggacaactctgcaccgtttcagctccagtcatttgatatt
gtgtgtagtacatcatgggctcgtcgagacaagtgctgcgatcttcccagtctgaggaag
gaggcagattgtcctgcactgcctcgagcgtgtacatgcactcaggacagtaaaggccct
gctggtccaccaggaccaccgggcggtcctggtattagaggaacaagaggagatcgagga
gagcctggacctgtgggtccagtgggtccagttggagaatcaggagtaccaggacctcag
ggccctcctggccctcaggggctcagcggccgatccatcagaggccctccaggtggtccg
ggtgaaaaaggggaaaaaggtgaagcaggacttcgaggtacacagggtatcccaggaaac
tcaggaagcccggggagggacggtcctcctggacccagaggtttgccgggtaacgacggg
ccacagggcagagcgggacctccgggaaatattggaggaccaggagctccaggggccccg
ggacagaatggccctccaggacccaccggcgatcagggaccccgaggccttgcaggttcg
aaaggagacaagggagaacgaggggatgcacagtccacttcttcagtccaagccattgcc
agacaagtgtgtgagcagctcatacagactcacatggctcgttataactccatcctgaat
cacattccgaggcagcaggcggcctctgttcgcactgtccccgggcctccaggtgaaccc
ggtcgagccggacctccaggacaacaaggagagcagggtcctcctggacgtcccggattt
ccaggaaccaacggagaaaacggccagcctggagtcagaggtcttccaggtgacaaagga
gagaagggaagctcaggtgttggtgtccagggtcccagaggaccttcaggacctccagga
cctcctggtgagggcagaagtggtagccctggtccatctggtcgccctggtaaccctggt
ggttccgggagaccgggcattcctggaccagtaggaccgcctggacccccaggatactgt
gatccaaactcctgcggaatgaggttctttcatcatgaagtgactgacagagatattccc
gtagccccaatgcagccaaacccctaccaaacatacggtcccgatgaggtggagggaggg
gaggaggatccgtacgccggctacggcacgcatcactcctactaccagcccagctacccc
gagccacacccggtcgggcctgaggaacccatcgcaatcgtggatgtagaggaagaactg
cgatctccaggcatccagcgtctcacgcgcagcacagaagagcaggagcataacagagag
acgagaacgagcgctcacttctga
DBGET
integrated database retrieval system
