Tachysurus vachellii: 132857817
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Entry
132857817 CDS
T09596
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tvc04515
]
132857817 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
tvc04990
]
132857817 (lrfn1)
Cell adhesion molecules [BR:
tvc04515
]
Immunoglobulin superfamily
SALM family
132857817 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
tvc04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
132857817 (lrfn1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
LRR_4
I-set
LRR_1
fn3
Ig_2
ig
LRR_9
Ig_DSCAM-DSCAML_C
Sp38
C2-set_3
PRIMA1
Motif
Other DBs
NCBI-GeneID:
132857817
NCBI-ProteinID:
XP_060743872
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Position
15:complement(3387670..3517581)
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AA seq
744 aa
AA seq
DB search
MERFIFCMMLLGVLVRGQQCPGRCICQTISPTLTLLCAKTGLLFVPHTIDRKTVELRLTD
NFITAVRRKDFLNMTSLVHLTLSRNTISQIAPHAFVGLKALRALHMDGNRLTDIKNDQLK
GLVNLRHLILGNNQIHHIDPSSFDEFVSTIEDLDLSYNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDPKGTSSSSKLTVSFG
GNPLHCNCELLWLRRLTRKDDLETCASPEQLMDKYFWSIQEEEFICEPPLIIKHQVTKPY
VMEGQGVTLKCKAMGDPDPTIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNC
VASNAAGIATAAVEINMIPLPLFVNNTSHMKEADPGLSDITTSTKSGNNDTKQQDKRVVV
DELTSNSAMIHWPSERHIPGIRMYQIQYNSTMDDTLVYRMIPPESKTFRINDLAAGREYE
LCVLAVYDDGITSLTATRVVGCVHFRTGPEAGQCQFAQAQFLGGTMIIIIGGVIVASVLV
FIVILMIRYKAYGTADASKIKGGMSGSAHHSGRATSKKQEHVGESPVGTDCHAIALLSLE
NETREEAKALTPPVNPEVAAMALVPAPPIPPSRRASLGAPPSDDNQTDSSLTGSTMSLCP
MGTSTSDRDRKRTPVAIGLLPGELARARHRFSFDGDYTLFQSHSYPRRARARRHKSSSQL
DVSPPTERRITFSSSTEWMLESTV
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtttcattttttgcatgatgctgttgggggttctggtgcgaggacagcagtgc
ccaggccgatgtatctgccagaccatctcacccaccctgaccttgctttgtgcaaagact
ggactcctgtttgttccgcacactattgatcgcaagaccgtagagttgaggctaacggac
aacttcatcacagctgtccgtaggaaggactttttaaacatgacgagcctggtgcacctg
acactgtcccgcaataccataagccagattgcacctcatgcttttgttggactcaaagca
ttaagggcacttcacatggatgggaaccgactgactgatataaagaatgatcagctgaaa
ggtttggtcaaccttcggcatctcatcctggggaacaaccaaatccaccatatagaccct
tcctcctttgacgagtttgtatcaactattgaggatttggatttgtcttacaacaacctg
aggacgttgccatgggaggctattgccaggatgaccaacatcaacacgctaactttggat
cacaatcttatcgatcacataggagctggaactttcacgctgcttaccaaactggtcaga
ttggacatgacgtccaaccgtttgcagaagctgcccccagactccctcttccagcatgcg
caagtgctgtctgatcctaaaggtacctctagttcctctaaacttacggtgagttttggt
gggaacccactccactgcaactgtgagcttttgtggttgcgcaggctcacccgaaaggac
gacctggagacttgtgcctcacctgagcaacttatggacaagtatttctggtccattcag
gaggaggagtttatctgtgaacccccactcattatcaagcaccaggtcactaagccatac
gtcatggaaggccaaggtgttacgctcaagtgtaaagccatgggtgatccagatcctaca
attcactggcgctttcctgatggaaagctggtccacaataactcacgtaccatcctgtat
gataatggaactctggacatcctgattacaaccctgaaagacagtggggcgtttaactgt
gttgcctccaatgctgctggaattgccacagcagctgtagagataaacatgatcccattg
ccattgttcgtcaacaacactagtcacatgaaggaggctgaccctggcttgtctgacatc
accacctccaccaaatctggcaacaatgacaccaagcaacaggacaagagggtggtggtg
gatgagctgacctccaattcggccatgatccactggccctcagagcgacacattcctgga
ataaggatgtaccagatccagtataacagtactatggatgacactctggtctacaggatg
attccaccagagagcaagacattccggatcaatgacctggcggcgggacgtgagtatgag
ttgtgtgttcttgccgtgtatgatgacggcatcacgtccctcaccgctacacgtgtggtg
ggctgtgtccacttccgtaccgggcctgaggcgggacagtgccagtttgctcaagcacag
ttcctgggtgggaccatgatcatcattattggtggcgtcattgttgcctctgtgctcgtc
ttcattgtcatcctgatgatccgatacaaggcgtatggcacggctgatgcctccaaaatc
aaaggtggaatgtctggaagtgcccaccactccggtcgtgccacgtcaaaaaaacaggag
catgtgggcgagtctccagtcggtacagattgccatgctattgcgctgcttagccttgag
aatgagactcgggaggaagcaaaggcactgacgccaccggttaacccagaggtggcagct
atggctctcgtacctgctcctcccatcccaccatcccgcagggcaagtttaggagcccca
ccttcagatgataaccagacagacagcagcctgacaggctccaccatgtcactttgcccc
atgggcaccagtacaagcgacagggacaggaagcggacgccagtggccattgggttgctg
cctggtgagctggcgagggcaaggcaccgcttctcatttgatggggactacacgctcttc
cagagccacagctacccgagacgggcccgtgcccgccgccacaaatccagctcgcagctt
gatgtctcgcctccgactgaacgtcgcatcacgttcagtagcagcactgaatggatgctc
gagagcacagtgtga
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