KEGG   Tachysurus vachellii: 132858071
Entry
132858071         CDS       T09596                                 
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tvc  Tachysurus vachellii
Pathway
tvc04510  Focal adhesion
tvc04512  ECM-receptor interaction
tvc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    132858071 (col4a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    132858071 (col4a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    132858071 (col4a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tvc04147]
    132858071 (col4a3)
   00536 Glycosaminoglycan binding proteins [BR:tvc00536]
    132858071 (col4a3)
Exosome [BR:tvc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   132858071 (col4a3)
Glycosaminoglycan binding proteins [BR:tvc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   132858071 (col4a3)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 132858071
NCBI-ProteinID: XP_060744232
LinkDB
Position
15:972732..1013030
AA seq 1663 aa
MLLLRATLSGILLLGFVTLAHAEECANNATPRCDCSGVRGERGDPGFPGQAGSKGEDGNP
GDEGHPGPMGPMGETGQPGLQGSKGSRGHPGKPGSSGSPGIPGLPGDEGPQGLPGSPGCN
GTKGDRGNPGGPGKRGAAGLQGDYGAPGPKGDTYYFSFPADLKGKNGLPGRDGPKGEPGP
QGNCGEPGPMGHVGPSGARGLSGLPGEKGQEGRPSIPGPQGLKGVRGIPGVTGQRGDCQF
ATAHIELKGEPGDPGDCGVPGPTGQPGPCGPKGQKGCRGDPGHLGDDGLTGLQGECGLNG
IPGVRGEPGPSGPYGLKGEKGDRGCVGPPGKFVMNQPVKGERGYKGLPGPPGLKGFQGIS
GFPGNSGIPGPGTPGEPGESGPPGFSGIKGEKGERAAEDIGPMGPDGPQGKSGSPGDPGP
KGLPDIYKQEGPSGFRGPKGVQGTYGETGIPGEKGDEGDLCRLCSYLGPTYGPPGPPGLP
GALGDPGPNGEPGSRGSIGIKGQIGPPGNPGLIGLPGTQGLQGQKGEPGFIGPGDNGDQG
DPGLQGDPGRIGKDGICGKPGLKGTKGEKGNPGPVGPKGNRGDPGTDGLPGFPGKMGDQG
SPGIGAPGEHGEKGSLGVHGLPGNPGDAGVKGEPGLVYMIPGDPGKCGKKGPKGLPGEPG
CPGPKGLCGLPGPCGIKGEKGPSLPGIQGLPGCKGEKGCRGSQGPPSIGLPGFPGPTGQC
GMPGLKGDSGTGPPGCSGPRGSPGEDGTLGPTGETGFPGRPGVCGQPGRDGCPGPKGDKG
FDGPPGVTGPAGVCVSGRPGEKGAQGQNGMPGMTGFCGQKGMNGEPGCQGQGLPGSPGPF
GTPGYNGEPGPVGPAGQKGFKGKNGIPGHTGSRGNDGPPGNCGFPGPPGKPGCPGKPGPK
GCAGGDGPPGYRGPQGLKGERGDPGPKGEPQNVYNPGDPGDPGDIGHTGLTGLKGDKGIQ
GPPGSCGKHGLQGSAGPPGPPGERGQEGLEGEPGVSGCVGEEGPMGMPGVKGEKGDPGKF
GTPGDPGIPGANGPKGLKGEPSFPGQGVQGCPGEKGEPGIHGIKGKKGGRGMCGPAGPSG
SEGLQGPPGDSGLPGLPGTPGLIGEQGCVGQQGPPGCPGSIGPPGSSGSPGNPGPHGIKG
NQGMDGIPGLPGEKGNAGVTGYGAPGPAGARGEPGAKGEPGPMGKTGLPGPCGPVGDRGP
CGVAGPPGPLGNPGAQGLCVDGPKGERGPPGEPGPPGPCGISGPPGPPGLGLKGEKGNTG
TPGAQGVFGYPGDTGLQGIPGKPGGVGYPGVKGERGLKGETGSRGQRGTDGSNGPQGSEG
PKGQRGAPGMPGEDVYHQDIVLSGDRGLPGPKGEQGPPGERGLPGISGRAGIVGPKGAPG
RDGMSGVAGLPGPKGNQGLTGLPGAPGFIGADGQKGTRGAPGASGCRSKATRDSFLFTKH
SQTQDIPHCPQGSSEVYSGYSLLFINGNNRGHGQDLGTMGSCLQMFSTMPFLFCNVDSTC
RYASRNDYSYWLSTDMHMPSDVPFITGDSLVQYVSRCSVCEAPGNVIAFHSQNNTIPSCP
FGWQSLWQGYSYVMQTGVGSEGSGQPLSSPGSCLVNFQRIPFIECHGRGTCNYYSDSYSY
WLAALDPSQMFSKPASRIPNDDDPSIISRCSVCMKQQACGQTS
NT seq 4992 nt   +upstreamnt  +downstreamnt
atgctccttctgcgcgcgacactctcgggaatattgctcctcggatttgtgacgctcgcg
cacgccgaggaatgtgcaaataatgcgactcccagatgcgactgcagtggagtcagaggc
gaaaggggcgatccaggttttccaggtcaggctggatcaaaaggggaagatggaaatcca
ggagatgaaggtcaccctggaccaatgggtcccatgggtgaaacaggacaaccaggttta
caaggctctaaaggctcacggggacaccctggaaaaccaggaagctcgggttctcctgga
atacctggactcccgggagatgaagggcctcagggattacctggtagcccaggatgcaat
ggcacaaagggtgaccgtgggaatcctggaggtccaggaaagcgcggagctgccggctta
cagggtgattacggtgccccaggccctaagggggacacgtactacttctcttttcctgcg
gatttgaagggaaaaaacgggttgccaggtagagatgggcccaagggtgaacctggacct
cagggtaactgtggagaacctggaccaatgggacatgtaggacctagtggagcacgagga
ctttctggccttccaggagaaaagggtcaagaaggacgcccatcaatacctggcccccag
ggtctaaaaggggtgagaggaattcccggcgttacagggcagaggggtgactgtcagttt
gctacagcacacatagagctcaaaggagaaccgggcgacccaggagactgcggcgttcct
ggacctactggtcagccagggccgtgtggccccaaaggacagaaaggctgcagaggagat
ccaggacatctgggtgatgatgggctgactgggcttcagggagagtgtgggcttaatggt
attcctggagtcaggggagaacccgggccttctggtccctatggtttaaagggggaaaaa
ggtgaccgtggttgcgttggtcctccaggaaaatttgttatgaatcagcccgtgaaaggt
gaaagaggatataagggcttacctggacctcctggccttaaaggatttcaaggtataagt
ggatttcctggaaactcaggcattccaggaccaggtacaccaggagaacctggggagtcc
ggacccccaggctttagcggaattaagggtgaaaagggagaacgagcagctgaagatatc
ggcccaatgggacctgatggacctcagggaaaatctggatctcctggtgatccgggtcct
aaaggactaccagatatttataaacaagagggtccgtcagggttcaggggaccgaaagga
gtacaagggacttatggtgaaacaggcatacctggggaaaaaggtgatgaaggagacctt
tgcagattgtgctcttatctaggtcctacatatggacctccaggaccacctggtttacct
ggtgcacttggagatccaggtcctaatggagaaccgggcagcagaggatcaatcggaatt
aaggggcagattggtccacctggcaatccgggtttgattggtcttcctggcactcaagga
cttcagggacaaaagggagaacctggctttataggacctggagataatggggaccaaggt
gacccaggattacaaggagacccagggaggattggaaaggatgggatttgtggaaagcca
ggattgaaaggcacaaagggagagaagggcaatccaggtcctgttggacctaagggtaac
aggggtgaccctggaacagatggattaccaggattccctggtaaaatgggagatcagggc
agccctgggattggagcgccaggggaacatggtgagaagggcagccttggagttcatggc
ctgccagggaatcctggagatgcaggtgtgaaaggtgaacctggtttggtctacatgata
cctggagaccctggaaagtgtggaaaaaagggtcctaaaggtctaccaggggaacctggg
tgtccgggacccaaaggtttatgtggacttccaggaccttgtggcataaaaggtgaaaaa
ggaccgtctttaccagggatacaaggactgcctggttgtaaaggtgaaaaaggctgtcga
ggttctcagggtccacctagcattggtctacctggtttcccaggacctacagggcaatgt
ggaatgccagggttgaagggtgatagtggtactggccctccagggtgctctggtccaaga
gggtctccaggagaagatgggacacttgggcctactggtgaaacaggttttccaggacgt
cctggagtttgtggacagccaggaagagatggatgcccagggcctaagggtgacaaagga
tttgacggaccaccaggggtgactggtccagcaggagtctgtgtttctgggcggccaggt
gaaaaaggagctcaaggtcagaatggaatgcctggaatgacaggattttgtggtcagaaa
ggtatgaacggtgagcctggatgtcaggggcaaggtttgcctggttctcctgggccattt
ggtacacctggttataatggagaacctggtcctgttggtccagctggtcaaaagggattc
aaggggaagaatggcattcctggccacacaggttcacgggggaacgatgggcctcctggg
aactgtggttttcctggacctcctggaaagcctggatgtcctggaaagcctggacctaaa
ggttgtgcaggcggtgacggaccaccaggttacagaggtccacaaggcctgaaaggggaa
cggggggatccgggtcctaaaggagaacctcaaaatgtctacaatcctggggacccagga
gaccctggagatataggtcatactggtctaactgggcttaaaggggacaaaggaatccag
ggaccacctggcagctgtgggaaacatggattacaaggctccgctggaccaccaggtcct
cctggagaacgtggtcaagaaggcttagaaggtgaacctggtgtttctggctgtgttgga
gaagaaggacctatgggaatgccaggtgtcaaaggtgagaagggggacccaggtaaattt
ggaacaccaggagatcctggtattccaggagcaaatggcccaaaggggctcaaaggtgaa
ccaagttttcctgggcaaggtgtccaaggatgccctggagaaaagggcgaaccaggcatt
catggcattaaaggaaagaaaggaggaagaggaatgtgtggccctgctggtccttcagga
tcggaagggctacaaggaccgcctggagattcaggactacctggactaccaggcacccca
ggattgattggagaacaagggtgtgttggacaacaaggtcctccaggatgtccaggatca
ataggaccaccaggtagttctgggtccccgggcaatccaggtcctcacggtataaaagga
aaccagggcatggacggtattcctggactccctggagaaaaagggaatgcaggagttact
ggatatggagctccagggccagctggtgccaggggcgaaccaggtgctaaaggtgaacca
ggacccatgggaaaaactggacttccaggaccgtgtggtccagtgggagaccgagggcct
tgtggtgttgcaggacccccagggccccttgggaatcctggtgcacagggtttgtgtgtg
gatgggcctaaaggggagcgaggacctccaggagaaccaggaccaccagggccctgtggg
atatctggtcccccgggaccacctggcctaggcttaaagggagaaaagggcaacactggg
actcctggagcacagggagttttcggttatccaggagacactggtctacaagggattcct
ggtaaacctgggggcgttggttaccctggtgtgaaaggagaaagaggactaaagggtgaa
actggatctcgaggccaaagaggaacggatggatcaaatggtccacaaggatctgaagga
cccaaagggcaaagaggagcaccaggtatgccaggggaagatgtttaccaccaagacata
gttctttctggagatcgtggcctgcctggacctaaaggagaacaaggacctcctggagaa
cgtggtctaccgggaatttctgggcgagcagggatcgttggccctaaaggagccccaggc
cgagacgggatgagcggtgttgcaggtttacctggacccaaagggaaccaaggattaaca
ggactgccaggagctccaggttttattggtgctgacggtcagaagggtaccagaggtgca
ccaggagcatcggggtgcaggtccaaagccaccagagacagctttctgttcaccaaacac
agtcagacacaagacatccctcactgccctcagggatccagtgaagtttactcaggatac
tcgctcctgtttatcaatggaaataaccgaggacatggccaagatctcggcactatggga
agttgtctgcagatgttctccaccatgcccttccttttctgtaatgtggacagcacctgt
cgctacgcctcccgaaacgactactcctactggctgtccactgacatgcacatgcccagt
gacgtgccctttatcacaggtgattcactggtgcagtatgttagcaggtgttcagtatgt
gaggctccaggtaatgtgatagcgtttcacagccagaacaacacaatcccctcgtgtccc
ttcggatggcagtctctgtggcaaggctactcttatgtcatgcaaacgggtgtaggatcc
gagggctcgggacagcccttgtcctctcctggatcctgtctggtgaatttccagaggatt
cccttcatcgagtgtcatggccgcggcacttgtaactattactcagattcctacagctac
tggctggctgctctggatcctagtcagatgttcagtaaaccagcatcacgaataccaaac
gatgacgatccaagcatcatcagtcgctgtagtgtgtgcatgaagcagcaggcgtgcggt
cagacatcctga

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