Tachysurus vachellii: 132858165
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Entry
132858165 CDS
T09596
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03030
DNA replication
tvc03420
Nucleotide excision repair
tvc03430
Mismatch repair
tvc03440
Homologous recombination
tvc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132858165 (rpa1)
03420 Nucleotide excision repair
132858165 (rpa1)
03430 Mismatch repair
132858165 (rpa1)
03440 Homologous recombination
132858165 (rpa1)
03460 Fanconi anemia pathway
132858165 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tvc03000
]
132858165 (rpa1)
03032 DNA replication proteins [BR:
tvc03032
]
132858165 (rpa1)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132858165 (rpa1)
Transcription factors [BR:
tvc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132858165 (rpa1)
DNA replication proteins [BR:
tvc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132858165 (rpa1)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132858165 (rpa1)
MMR (mismatch excision repair)
132858165 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
132858165 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Por_Secre_tail
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
132858165
NCBI-ProteinID:
XP_060744378
LinkDB
All DBs
Position
15:complement(10946018..10977205)
Genome browser
AA seq
610 aa
AA seq
DB search
MTVKLSEGAIEALIKGKEVTNPVLQLINIRKLDSGNGPVRFRLMMSDGLHTMSSFMLATP
LNSLAEQNLVAPNCVCLLKKSVTNVLKDGRTVVIILDLEVIKSADQMAGKIGDPTPYVEG
QSKAPQTVPAHAPSASPATSAASARPLQPQNGGSMNRGSSRDFGKNPMTAPSTPGGTSKV
VPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDK
FFSLIEQGKVYYISKGTLKIANKQFTSLKNDYEMTLNGESSIIPCDDSSDVPMVQCDFVS
IADLDARDKDAIVDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKIIQVTMWGNEA
ETFDGTGQPILAIKGARLSDFGGRSLSTLYSSTLMINPDIPEAYKLRGWYDKEGHALDGQ
SMTEMRGGGGGGPTNWKTLADVKNEHLGHGDKADYFTCIATIVYMRKENCLYQACPSKDC
NKKVVDQQNGMYRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETILGQKSDY
IGQLKDSNEAAFDEVFQHANFSTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYSKRL
IMSIRKHAAH
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaaattgtccgagggcgcaattgaggccctgatcaaagggaaagaggttaca
aacccagttcttcagcttattaatattcgaaagctcgattcaggtaatggaccagttcgc
tttcgcctcatgatgagcgatggccttcacaccatgtcctccttcatgcttgccactcct
ctgaactccttggctgaacaaaaccttgtggctcccaactgtgtgtgcttgctgaagaaa
agtgtcaccaatgttctaaaggatggacgcactgtggtaattatcctggacctggaggta
attaaatctgcagatcagatggcaggaaaaatcggagacccaactccttatgttgagggt
caatccaaggctccacagactgttcctgctcatgctccatctgcttctccggctacttct
gctgcttctgcacgtccactgcagccacaaaatggaggctccatgaatagaggctccagt
cgtgattttggaaagaatcctatgacagctcccagcacaccaggaggcacttcaaaagta
gtgcctattgccagccttaatccctaccagtcaaaatggaccattagagcacgagtgacc
aacaagagcgccattcgtacctggagcaactctcgaggggatgggaagctcttctccatg
gagattgttgacgaaagtggagaaattagagtgactggttttaatcaggaggtggacaaa
ttcttctccctgatcgaacaggggaaggtgtactacatctctaagggcactctgaagatc
gccaacaaacagttcacatcccttaagaacgactatgagatgaccctgaacggcgagtcg
tctatcatcccctgtgacgacagctctgacgttcccatggtgcagtgcgactttgtctcc
attgctgatttggatgctcgggataaggacgccattgtggatgtgatcggcgtgtgtaag
agtgtggaggatgtgacacggattacaactaagaacagtcgcgaggtttccaagaggaac
attcagctgatggatatgtctggcaaaattatccaagtcaccatgtggggaaatgaggca
gagacatttgatggcaccggacagcctatcttggcaataaagggtgccagactctcagat
tttggagggcgctctctttccactctctacagcagcacactgatgattaaccctgacatt
cctgaggcatacaaactgcgaggctggtatgataaagagggtcatgccctagatggtcag
tctatgacagaaatgagaggaggaggcggcggaggccccactaactggaagactttggca
gatgtcaaaaacgagcacctgggtcacggcgacaaggctgattacttcacctgtatcgcc
accattgtgtacatgaggaaggagaattgtctgtatcaggcttgtcccagcaaggactgc
aacaaaaaggtggtggaccagcagaacggaatgtaccgctgtgagaagtgtgacaaagag
tttcctgacttcaaatatcgtctcatgctctctgcaaatattgcagattttggagataac
cagtgggtgacatgctttcaggacactgctgagaccatcctgggccagaaatctgattac
attggccaactcaaggactctaatgaggccgcttttgatgaggtcttccagcatgccaat
ttcagcacttttgtctttcgcaaccgagtgaaattggagacctacaatgatgaatctcgc
attaaagtaacggtggtggaggccaagcctgtggatcacaaggaatacagcaagaggctg
atcatgagcatcaggaaacatgcagcacattag
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