Tachysurus vachellii: 132858301
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Entry
132858301 CDS
T09596
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03022
Basal transcription factors
tvc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132858301 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
132858301 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvc03021
]
132858301 (ercc2)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132858301 (ercc2)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132858301 (ercc2)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132858301 (ercc2)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132858301 (ercc2)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132858301 (ercc2)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132858301 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
132858301
NCBI-ProteinID:
XP_060744570
LinkDB
All DBs
Position
15:complement(9585760..9595259)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAYPLEVTKLIYCSRTVPEIEKVVEELRKLMDFYAKETGQENTFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSNPSQPVCRFYEEFDAVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYYLARYSLLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRTQANVDTLQNTIQRIKETDAAKLQEEYRRLVEGLKEANVARE
TDVYLSNPVLPDEILQEAVPGNIRTAEHFIGFMKRFLEYLKSRLRIHHIVQESSPQFLKD
IYEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISHFATLVSTYSKGFTIIIEP
FEDRTPTIVNPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLEIYPRILDFHPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLELSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHITDGSLNLTIDETVQLGKHF
LRQMAQPFRREDQLGLSLLTLEQLQSEEMLQKISQIAHQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgaacatcgaaggtctgttagtttatttcccatatgactacatctacccagaa
cagtactcctacatgctggagctcaagaggacactagatgctaagggtcatggcgttctg
gagatgccctcagggactggaaaaacaatttctcttctatcgttgattgttgcttatcaa
aaggcctatcctcttgaggtaaccaagttgatttactgctctcgaactgtacctgagata
gagaaggttgtagaggagctgagaaaactaatggatttttatgcaaaggaaacaggacag
gaaaataccttccttgctttagcactttcttccagaaagaatctgtgcattcatcctgaa
gtgagcgctctgcgctttggaaaagaggtggatggaaaatgtcacagtctgacagcatca
tacattcgtgcacaacgtcacagtaaccccagtcaacctgtctgccgcttctatgaggaa
tttgatgctgtgggcaggcaggtgccaattcctcctggaatttacaacctagatgacctt
aaagattttggacggaggaaaggctggtgtccgtactacctagcacgctactcgcttctt
catgctaatatagtggtttacagttaccattaccttctggaccccaaaatcgcagacctg
gtctcaaaagagcttgcaaagaaatctgttgttgtctttgatgaagctcacaacatcgac
aatgtgtgcattgactcaatgagtgttaacatcacaaggaggacgctggaccgcactcag
gccaatgtggacacacttcagaataccatccaaaggataaaagaaactgatgctgctaaa
ctacaagaagaatacaggagattagtggagggattaaaagaagccaatgttgccagagaa
accgatgtctacttgtcaaatccagtacttcctgatgaaatactccaagaggctgttcca
ggaaatatccgcacagcagagcactttataggcttcatgaagcgtttcctggagtacctg
aagtctcggctgcgtatccatcacattgtgcaggagagttctcctcagttccttaaagat
atctatgagaaggtgtgcattgaccgcaagcccctcagattctgtgcagaaaggctacgc
tcattattgagaactctggagattgcagatatcgctgacttttctgccattactctgatc
tcccactttgctacccttgttagcacctatagcaaaggcttcacaattattattgaacct
tttgaagacagaacgcccacgattgttaatcccgttctgcacttcagctgcatggaccct
tccatcgctataaagcctgtgttcgagcgtttccagtcagtcatcatcacttcagggact
ctttctccactggaaatctatccccgaatcttggacttccaccctgttaccatggcatcc
tttaccatgacactggcacgcacctgcctttgccctcttattgttggacgtggaaatgac
caagtggctctgagttctaaatttgagaccagagaagattttgctgtgatccggaactat
gggaacctgcttctggaattgtctgccattgtacctgatgggatcgttgcatttttcacc
agctatgtttacatggaaaacattgtagcttcatggtatgagcagggaatcctggaaaac
atccaaaggaacaagcttattttcatagagacacaggatgcagcagagaccagcatggca
ctagagaagtaccaagaggcttgtgaaaatggcagaggagccatcctgctgtctgtggct
agaggtaaagtgtctgaagggatagactttgttcatcactttgggcgagctgtgatcatg
tttggagtcccgtatgtctatacccagagtcgaatactaaaggctcgcctggagtatctt
cgagaccagtttcaaatccgtgagaatgacttccttacctttgatgccatgcggcatgcg
gcacagtgtgtaggcagagccatccgaggcaagaccgactacggcctcatgatctttgct
gacaagcgttacgccagggctgacaagcgaggtaaacttccacgctggattcaggaacac
attacagatggcagccttaacctgaccattgatgagacagtgcagcttggcaagcacttt
ctgcgacagatggcacagccatttcgacgggaggatcagttgggcctgtctctgctgacc
ctggaacagctgcagtcagaggaaatgctgcagaaaatctctcagattgctcatcaggct
taa
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