Tachysurus vachellii: 132858581
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Entry
132858581 CDS
T09596
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132858581 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132858581 (prpf8)
Spliceosome [BR:
tvc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132858581 (prpf8)
Complex C
U5 SnRNP specific factors
132858581 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
132858581
NCBI-ProteinID:
XP_060744947
LinkDB
All DBs
Position
15:14817694..14832549
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPGGMPPGVPPPVPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDSSVVDWFYEHQPLKDTTKYINGVTYRHWRFSLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDLNLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPECVEPFLKETPLYSDNTANGIALLWAPRPFNLRSGR
TRRALDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREILRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
ATEIAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctacatttccttacagaggagtcccaggtgggatgccaccaggtgttcctcct
cctgtccctgttcctgattacatgactgaggagaaactgcaagaaaaagcccgaaaatgg
cagcagctgcaggccaagcgctactctgagaagaggaaatttggttttgtggatgctcag
aaggaggacatgcctcctgagcatgtgcggaaaattatcagagaccatggagacatgacc
aacaggaagttccgtcatgacaaaagagtctaccttggggctctgaaatatatgcctcat
gcagttctcaagctgttggagaacatgcccatgccctgggagcagatcagagatgtacca
gttctgtaccacattacaggggctatttcgtttgttaatgaaattccctgggtcattgag
cctgtctacattgcgcagtggggtacaatgtggattatgatgcgacgtgagaaaagagac
aggcgacacttcaagcgcatgcgtttccctcctttcgatgatgaagagcctcccctggat
tatgcagataacatccttgatgtggagcctctggaggccattcaaatggagctggaccct
gaagaggacagctctgtggtggattggttttatgagcatcagcccttgaaagatacaaca
aagtacatcaatggagttacatacaggcattggcgtttcagtttgcccatgatgtctaca
ctgtatcgtttggccaatcagctgcttaccgatttagtggaccgtaactacttttatcta
tttgacctaaaggccttcttcacttcaaaggcattgaacatggccataccaggaggaccc
aaatttgaacccctagtcagagacctcaatctacaggatgaagactggaatgagtttaat
gacatcaacaagatcattataagacagcctattaggacagagtacaagattgcgttccca
tacttgtacaacaaccttccccatcatgtgcacctcacttggtaccacacacctaatgtg
gtgttcatcaagacagaggatcctgatttgcccgccttctactttgacccacttatcaat
ccaatctctcacagacactcagttaaaagccaggagccactgcctgatgatgatgaggag
tttgaacttcctgagtgtgtggagcctttcctcaaagagacacctctgtattctgacaac
acagccaacggaattgctttgctgtgggcacctcgtccgttcaacctgcggtcagggaga
actcgtcgtgcacttgacgttcctctcatcaagaactggtaccgtgagcattgccctgca
ggacagcctgtaaaagttcgtgtctcttatcaaaaacttctgaagtactatgtgctcaat
gctttgaaacacagaccacctaaagcacagaagaagaggtaccttttccgttcattcaag
gccaccaaattctttcaatccacaaagttggactgggtggaggttgggctccaggtttgc
cggcagggttacaacatgctgaacctgctgattcacagaaaaaacctcaactacctgcac
ttggactacaacttcaacttaaaaccagtgaaaaccctcaccacaaaagagcgtaagaag
tcccgtttcgggaacgcgttccacttgtgccgtgagattctgcgtctgagcaaactggtt
gtggatagccatgtgcagtacagactggggaatgttgatgccttccagttggcagatggg
ttgcagtatatctttgcccatgttggtcagctgactggcatgtatcgctacaagtacaaa
ctgatgaggcagatcaggatgtgcaaggatttgaagcatctcatttattatcgtttcaac
actggcccagttgggaagggtccaggttgtggcttctgggctccagggtggagagtgtgg
ctcttcttcatgaggggcattactcctctcctggagagatggctaggtaacctgttggcc
aggcagtttgaaggtcgacactccaagggagttgcaaagactgtaactaaacagcgtgtg
gagtctcactttgacttggagctgagagcagctgtgatgcatgacatcctggacatgatg
ccagagggaatcaaacagaacaaggccaggaccattttgcagcatctaagtgagtcctgg
agatgctggaaggccaacatcccctggaaggttccaggacttcccactcctattgaaaac
atgatcttgagatatgtcaaggccaaagctgactggtggaccaacacagcacattacaac
cgagagcgaatcaggcgaggagcaactgtggacaaaacagtctgcaagaaaaaccttggc
cgcctcacacgactctacctgaaggctgagcaggagagacaacacaactacctaaaggac
ggaccgtacatcactgctgaagaggccgtggctatctacaccaccacagtgcactggctg
gagagtcgacgcttctctcccattccatttccccctctctcatacaaacatgacaccaag
ctgctcatcctggctctggagaggctcaaagaggcttacagtgtgaagtcaaggttgaat
cagtcccaacgtgaagagctgggtctgattgaacaggcttacgacaatcctcatgaggct
ttgtccagaatcaagcgtcatctcctcacacagagagcattcaaagaagtgggcattgag
tttatggacctatacagtcaccttgtgcctgtatatgatgtggagcccctggagaagatc
acagatgcatacctggaccagtacttgtggtatgaggctgacaagcgcaggcttttccca
ccatggatcaaacctgctgacacggagccgcctccattgcttgtatacaagtggtgccaa
ggtatcaacaacctgcaagatgtgtgggagaccacagaaggagagtgtaatgtcatgctg
gagtcacgatatgagaagatgtacgaaaagattgacttaacgctacttaacagacttctg
cgtctgattgtcgaccacaacattgctgattacatgacggcaaagaacaacgtggttatc
aattacaaggacatgaaccacaccaactcatatggcatcattaggggcttgcagtttgcc
tccttcattgtgcagtactatgggttggtgatggacctgctcgttctgggtcttcatcgt
gctagtgagatggctggacccccacagatgcccaacgattttctcagcttccaggacagc
gctacagagattgcccaccccattcgcctgtactgcagatacatcgaccgcatccacatg
ttcttcaggttttctgctgatgaggccagggatctaatccaacggtaccttaccgagcac
cctgatcccaacaatgagaacattgtaggctacaacaataagaagtgctggcccagagat
gctaggatgagactgatgaagcatgatgttaacctgggccgtgccgtgttttgggacatt
aagaaccgccttcctcgctctgtgaccactgtgcagtgggagaacagctttgtgtcagta
tacagtaaagacaaccctaacctgctcttcaacatgtgtggatttgagtgccggatcctg
cccaaatgccgcactagttatgaggagttcactcacaaggatggggtgtggaacctgcag
aatgaggtaacgaaggaaaggacagcgcagtgcttcctgcgagtggatgatgaatcaatg
cagaggttccataaccgagtgcgacagattctcatggcctctggatccaccactttcacc
aagatcgtgaacaaatggaacactgctctgattggtctgatgacctacttccgtgaggct
gtggttaacactcaggagttgcttgatcttttggtgaaatgtgaaaataagatccagaca
cgtatcaagattggtctgaactccaaaatgcctagccgtttccctcctgttgtcttctac
acacccaaagagttaggaggtctgggcatgctttctatgggtcatgtgctcatcccgcag
tctgacctcaggtggtccaaacagacagacgttggcatcactcacttccgttccggtatg
agccatgaggaggatcagctgattcccaatctgtatcgctacatccagccatgggagagt
gagttcattgattctcagagagtctgggctgaatatgctctcaagagacaagaggccata
gcccagaacaggcgtttgactcttgaagatttggaggattcctgggacagaggtattcct
cgcatcaacaccctgttccagaaagacagacacacacttgcctatgacaagggctggaga
gtcagaaccgacttcaagcagtatcaggtgctgaagcaaaatccgttctggtggactcac
cagagacacgatggcaaactgtggaatttgaataattaccgcacagacatgatccaagca
ctaggtggagtggaaggaattttggaacatactctcttcaagggtacatactttcccacc
tgggagggtctgttctgggagaaggccagtggttttgaggagtccatgaaatggaagaag
ctaaccaatgcccagagatctggtctgaaccagatccccaatcgacgatttactttgtgg
tggtctccaaccatcaacagagcgaatgtatatgtgggtttccaggtgcagttggatctc
actggaatcttcatgcatggcaaaattcccactctcaagatctccttgatccagatcttc
agagctcacttgtggcagaagattcatgagagcattgtcatggatctgtgtcaggtgttt
gaccaagagctggatgccctggagattgaaactgtccagaaggaaaccatccatcctagg
aagtcttataagatgaactcctcttgtgcagatattctgctttttgcgtcctacaagtgg
aacgtctcaagaccatcactgcttgctgactccaaggatgttatggacagcaccaccact
cagaagtactggattgacattcagctcagatggggagactatgactctcatgacattgag
agatatgctagggccaagtttctggactacaccaccgataacatgagtatatacccatcc
cctactggggtgctcattgccattgatctggcatacaatctgcatagtgcttatggaaat
tggttccctggcagtaagcctctgattcagcaagccatggctaagatcatgaaggccaac
cctgccctgtacgtgctgagggagcgcatccgcaagggtctgcagctatactcctccgag
cccactgagccctacctgtcctcgcagaattatggagagctcttctccaatcaaatcatc
tggtttgtggatgacaccaatgtgtacagagtcaccatccacaagacctttgagggcaac
ttgacaacaaaaccaataaacggggccattttcatctttaatccaagaactgggcaacta
ttcttaaagatcattcacacatccgtgtgggctggacagaaacgtctgggacagctggca
aaatggaaaaccgctgaggaagtggctgctcttattcgatcgctgcctgttgaagagcag
cccaaacagatcattgtgacaaggaagggcatgttggatcctcttgaggtgcacttgttg
gatttccctaacattgtcatcaaaggctctgagctgcagttgccattccaggcttgtcta
aaggtggaaaagtttggggacctcattctgaaggccactgagccgcagatggtcctgttc
aatctgtatgatgactggctcaagacaatttcttcttacactgccttctcacgtctcatc
ttgatcctgagagccctccatgtgaacaacgaccgtgcaaaggtaatcctgaagcctgac
aaaaccaccatcactgagccacatcacatctggcccactctgactgatgaggagtggatc
aaggtggaggtgcaacttaaagatctcatcttggctgattatggtaaaaagaacaatgtg
aatgtggcttctctgacacagtctgagatcagggacatcatactgggtatggagatctct
gctccatctcagcagaggcagcagattgctgagattgagaagcagactaaagagcagtct
cagctaacagccacgcagactcgcacagttaacaagcatggtgatgaaatcattacatcc
accaccagcaactatgagacccaaaccttctcttcaaagactgaatggagggttagggct
atctctgcagccaacttgcacttgcgtaccaaccacatctatgtgtcatctgatgacatc
aaagaaactggatacacttacattctccctaagaatgtgctgaagaagttcatctgcatc
tctgacttgcgtgctcaaattgctgggtatctgtatggtacaagtcctcctgataaccca
caggtgaaagaaattcgctgcattgtgatggtgccacaatggggcacccatcaaactgtc
cacctgcccagtcagcttccacagcatgaatatctcaaggaaatggagccacttggttgg
atccacacacaacccaatgaatcgcctcagttgtctccccaggatgtcaccacacatgct
aaagtcatggctgataatccatcctgggatggagaaaagaccatcattattacctgcagt
ttcactccaggatcttgtacactgacagcttataagctgactcctagtggatatgagtgg
ggcaggcagaacacagataagggcaacaatcccaagggttatctgccatctcactatgaa
agggtgcagatgctgctgtctgatcgcttccttggcttcttcatggtgccaggtcaagtg
tcttggaactacaatttcatgggtgttcgacacgaccccaatatgaaatacgaactgcag
ctgtccaacccaaaagagttttatcacgaggttcacaggccttctcacttcctcaatttt
gcatcgctgcaggagggtgagatctacaatgctgaccgagaggatatgtacggttag
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integrated database retrieval system
