Tachysurus vachellii: 132859521
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Entry
132859521 CDS
T09596
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03440
Homologous recombination
tvc03450
Non-homologous end-joining
tvc04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132859521 (rad50)
03450 Non-homologous end-joining
132859521 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
132859521 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvc03032
]
132859521 (rad50)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132859521 (rad50)
DNA replication proteins [BR:
tvc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
132859521 (rad50)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
132859521 (rad50)
BRCA1-C complex
132859521 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
132859521 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
Intein_splicing
ABC_tran
AAA_29
AAA_22
AAA_16
zf-met
AAA_13
Motif
Other DBs
NCBI-GeneID:
132859521
NCBI-ProteinID:
XP_060746187
LinkDB
All DBs
Position
17:complement(22791230..22815742)
Genome browser
AA seq
1313 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIISFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGEPIAVQRSMQSTQKGKKAPEFKTLEGVIT
RIKHGEKVSLSSKCAEIDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEI
FSATRYIKVLETLRQLRLKQSNAVKSCQVELKYLKQNKEKAQEIKEQLSTKEAQLAASKE
SVQRIENQIDPMENRLNDIDDNLGKVMKLDNDIKALDSRKKQMEDDNRELEEKIEQVFQG
SDEQLQEMYENHQLTVKKKVKRLTECQRDLEKAGRECQRMNYIKSDLLVEQGRLQMEADK
QALHIKNRDAQVKSLASYLEMEGYDRAPFSDRQLQSFHKQVRERQDQESEALSRVMIDLQ
EKETQKQQNIDEIRDKKTGLERTIELKKDIQVKKQQELKNFKFELQRLEGSSSRLQELET
ELTKAERELEKAVQDSTVDHLRMEVQGLQREKVELDQNQRKLDQEMETLNIHTTARTQMD
MLKKDKTDKEDQVRKIKSRHNEDLVSLLGHFPNKRELEDWIYSKSREINSIREKLSKLNK
ELASREQNKSHCTTEIRRKEQQLASYEEKLFNVCGSQDFESDLSKLQDDLEKSSKQRAML
AGATAVYTQFISQLTEEGEPCCPVCQRVFPSESELQDVINDMQSKLRLVPDKLKSTEQDL
KRKERRRDDMMALKPVRQTIAELHEKDLPELKNKLQSVNREIEKFKRDIEEQESLLSLLM
SEEDTAKACLQDISLMDRYQLDLKDVERKIAQHTAKLQGVDLSRTMQHISQEKQEVQHRL
DTTSSKMELKRKLIQDQQEQIQTLKSSVNEIRAEKLQISSNMQKQQQLEEQCVEFSAEIQ
DLQREIRDAKEQVCPLAITLEKLQHEKQDLIERKNQKQSEGQEKIDAMKERVKSLAISER
EIGKYIEEGKDEYKQQKEAELQEINAQLTEAEKQREKINKDMGNIRQDIDTQKVQERWLQ
DNLTLRKRVEELKEVSRRREVLLKEMGNMQVMELRNERRELERKLDDLKKNRSLAVGRQK
GFEEEILHFRKELREDQYCQAEERFRDKMIIMRTTELANKDLDIYYKALDQTIMKFHSMK
MEEINKIIRDLWRSTYRGQDIEYIEIRSDVDENASAGAKRRTYNYRVVMVKGDTSLDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYMEHFYRIKKNQDQCSEISKCSITTLNSYLR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattgagaagatgagcatccttggagtgaggagttttggagttgaggacaaa
gacaagcagatcatttcattcttcagtcctctgacagtgttggtcggaccaaatggagcc
gggaaaacgactattatcgagtgtcttaaatatgtcacctcaggagatttcccacctgga
agtaaaggaaatacatttgtacatgatccaaaggatgctcatgaaacagatgtacgtgcc
cagatacggctacagttcagagacgttaacggggagccaatagctgttcagcgttccatg
caaagcacacagaagggcaaaaaagcacccgaattcaaaaccctcgaaggagtcatcacc
agaataaagcatggggaaaaagttagtctgagctcaaaatgcgctgagatagatcgtgag
atgatctcagctctgggcgtttcaaaggcagtgctcaaccatgtcatcttttgccaccaa
gaggagtctaactggcctctcagtgaaggaaaagccctcaagcagaaatttgatgagatt
ttctcagcaacaaggtacatcaaggtgctggaaacccttcgtcagttaaggctgaagcag
tccaatgctgtcaaatcttgtcaggtggagttgaaatatctgaagcagaataaggaaaag
gcacaggagatcaaggaacagctgtccactaaagaagcccagctagcagcttctaaagaa
agtgtacagcgcattgagaaccaaattgaccccatggagaatcggttgaatgacattgat
gacaatctaggcaaagtaatgaaactggataatgatatcaaggctctggacagcaggaag
aaacagatggaggatgacaatcgtgaattagaggagaagattgagcaggtgtttcaaggt
tcagatgagcagctacaggagatgtacgaaaatcaccagctcacagtcaagaagaaagtg
aagaggctcacagaatgccaacgtgatctggagaaggcaggccgtgagtgccagaggatg
aactatattaaatcagacctacttgttgaacagggtcgcctacagatggaagcagacaaa
caggctctgcatataaaaaatcgtgatgctcaagtgaagtctttagcttcttacctggaa
atggagggatatgatcgagctcctttcagtgacagacagctccagagcttccataagcaa
gttagagagagacaggatcaagagtctgaggcactcagcagggttatgattgacctgcaa
gagaaggaaacacagaaacagcaaaacattgatgagattcgtgataagaagacaggtttg
gagaggaccattgagttgaagaaggacatacaggtcaaaaagcagcaagaactaaagaac
ttcaagtttgaacttcaaagactggaaggttcctcatccagacttcaggaactagagact
gagctcacaaaagcagagcgagagctggagaaggctgtgcaggattccactgtggaccat
ctaagaatggaggtgcaggggctacagagagaaaaggtggaactggatcagaaccagcgc
aaactagatcaggaaatggaaaccctcaatatacacaccacagcacgcacacaaatggac
atgctgaagaaagataaaactgataaagaagatcaagtaaggaagatcaagtccaggcac
aacgaagacttggtttctctgttgggccattttcctaacaagagagagcttgaggactgg
atttatagcaaatcaagagagatcaactctatcagagagaagctgagcaagctcaataag
gagttggcatccagagagcaaaacaagagtcactgtacaactgagattcgacgcaaagag
cagcagctggccagctatgaggagaaacttttcaatgtttgtggtagccaggactttgag
tctgatctgagcaaattgcaggatgacctggagaagtcttccaagcagagagcaatgctg
gctggggctacagccgtgtacacccagttcatcagccaactgacagaagaaggtgagccg
tgctgcccagtgtgtcagcgtgtctttccctcagagtctgagctccaggatgtcattaat
gacatgcagtccaagctgcgtctggtgccagacaagctgaaatccacagagcaggacctg
aagaggaaggagcgtaggcgtgatgacatgatggccctcaaacctgtcagacaaactatt
gcagagctgcatgagaaggatctgccagagttaaagaataaactgcagagtgtgaaccgt
gaaatagagaaatttaagagagacatcgaggagcaggagagtctgctgtctctgttgatg
tctgaggaggatacagccaaagcctgtttacaagacatttccctcatggaccgctaccag
ctggatctgaaggatgtggagaggaagatagcacagcatacagcaaagcttcagggagtg
gacctgagccgcaccatgcagcacatcagccaagagaagcaggaggtccagcatcgcctt
gacaccaccagtagtaagatggagctaaaacgcaaactcattcaggaccagcaagaacag
atacaaaccctaaagagtagtgtgaatgagatccgtgctgaaaagcttcagatttccagt
aacatgcagaagcagcagcagctggaagagcaatgtgtggaatttagtgctgaaattcag
gatctgcaaagagaaatacgggatgctaaggagcaggtctgtcctctggccatcacttta
gagaagctccagcatgaaaagcaggatctgattgagcgcaaaaatcaaaaacaaagtgag
ggccaggagaagattgatgctatgaaagagagagtcaaaagtttggctatatcagaaaga
gaaattggcaagtacattgaagagggcaaagatgaatacaaacagcaaaaagaggcagaa
cttcaggagataaatgctcagctgactgaagctgagaaacagcgagagaaaatcaataag
gacatgggaaatatccggcaagatatcgacactcagaaggtacaagagcgctggcttcag
gacaacctgaccctgagaaagcgtgtggaagagcttaaggaggtttcccggagaagggag
gtcttactgaaggagatgggcaacatgcaggtcatggaactgcgcaatgagcgacgggaa
ttggagcggaagttggacgacctgaagaagaatcgcagtttggctgtggggcgacagaaa
ggctttgaggaggagatcctgcattttcgcaaggaacttcgtgaggatcagtactgccag
gctgaggagagattccgtgataagatgataatcatgaggaccactgagctggcaaacaaa
gacttagacatctactataaagcactggaccaaacaatcatgaagtttcacagtatgaag
atggaagagatcaacaaaataattcgggacctgtggaggagcacgtatcgtggacaagat
attgaatatatagagattcgctctgatgtggatgaaaatgcctctgctggtgcaaagaga
cgaacatacaactacagagtggtcatggtcaaaggagacacctctttagacatgcgagga
cgctgcagtgcaggacagaaggttttggcctcgctcatcatacggctggctttggcagag
acattctgtctgaactgtggaatccttgcactagatgaaccaactaccaatctagacagg
gagaacatagagtctttagcccatgccttggtggaaatcatcaagagtcgctctcggcag
cgtaacttccaactgctcatcatcacccatgatgaggattttgtggagcttctgggtcgc
tccaactacatggagcacttctacaggatcaagaagaaccaagaccagtgctcagagatc
tccaagtgcagcatcacaactctaaatagctacctgcgttaa
DBGET
integrated database retrieval system
