Tachysurus vachellii: 132859562
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Entry
132859562 CDS
T09596
Symbol
setx
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvc03021
]
132859562 (setx)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132859562 (setx)
5.6.2.5 RNA 5'-3' helicase
132859562 (setx)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132859562 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
UvrD-helicase
AAA_30
AAA_22
AAA_16
TniB
NPHP3_N
TIP49
GLF
FapA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132859562
NCBI-ProteinID:
XP_060746271
LinkDB
All DBs
Position
17:complement(7356904..7382544)
Genome browser
AA seq
2339 aa
AA seq
DB search
METCRWCTASPENDVAVKEVLKRYCTGEMTQKEMHDANSDFIYCLECVVKYHRAREMVPE
LHKRLWELETTRLLEVFREMLEADLEDDDLYFVEEGYNLPVSNVTPEEFHNRLRFPLVEV
LKYPYLLCHQELCEMVVNVLCKMEDMRNPLPVHDQYQGTYLLMVHPNETVRRWAIATARS
LGRVDRDNYYDLQEVFACMFYVIDLGITVDFLSTDDSYCSGKLKMLQPHLFDSKNKKSYW
LGICMLLMQLDSQAMDSLLMGPEGQSSIPQCIVNTMNDSNKDDDLDPFWPAFHCFLVILD
RLGSKIWGQIEPLDAFKAITKAGSYMAKIENIREQTARTRVKVEPENHDDLLSCSQIVYD
CYTMERASRSSDCSSDNSDTSGNAIFEEMSCLVNVLQSEMGQGMRVYGSTFLWFIPFVRA
LMELNELNSICVGEVIHYLENNVDKNVLSGRTQTCDKVTEFFIRILVDLIKLHMNNGYME
RLSYFTHIWVDMVMQCATLSDDFCNTRGAYSTSHFGRGTLMPAVGVGAMSQDCMKLIRSM
LKEGGRTGSDPESAHFLDLINRHLRFFSSKGWNLSKSEYDNLKKCLLRLVKVITERPKVS
NDVLPCAPPTPPSDPSENVISYPNSTVTLPLQQVQTKDAEVGPCGPVGTTNFIKEEPLWN
HEECQSFCDGHEEIIKVKKEPCNPMPISESRSMEGSRIVAPEKLQEIKSRLADKNFSMKQ
TIVKGRLKTEDEQGNCSGLKEISHASSVSPQPSTSQSKIPDSARLSKSSKKKLDNDDDEP
LDVRMHRLKRSKKSSEEDSDNTRQISIQLSSTAKPIHASSINISDHSVSLSDKLLENRVK
RDTLEDLDSKSPGRDFDDLSESQVFEFETQAHMVSSWNEPHIDITDVSKKHKLQYDSKAC
SSHDAVEPMDTQPISDEDIEKACLQVEVQICKEQQPQEPISSGIPPKPSSNEKSDFIQHS
KGQTEKRVPTDKGKRGLCKKPPVIAALSQKIKKRPHDPISKDLVKPSSSTMLTSSSVVPP
FTIAPSRGTSASSVTPLRSTPAVVPTKKVRKRVEPELPAELLGLKKKERKAFEFSQRSLV
TLGELRSHGQNVHVDAQPKSKRIRQPKVVAKKGKKLIASQDLQYFRQSRSMLEKSTSATP
VAAKSYQRPVPETLPKLKPAIETMEEPRDEEDDYSFLPCSQPDPERRMDNKLGTTEVNTS
NTNDSKNTVSDWDETNKSKEFSSLQNNKCVSITEGKESRHENGHGGDSYDDEWMSFTQNE
PTDMELCSQMEQMEEQYDEKHSNISEAETSVSLKPVSCNIIQKSLPDASTASTSNDPLLI
KPSTLTEKKAKPPTKIYTSCSRSASLAKEMGKVANPLPAGNVTKAKVVRPPSAMPPPSAM
PPPSAMPPPPPSAMLPPPPSAMPPHSAVPPPIPKSTPQHEFSQPIPPRPILHTPNQVSKP
SFNVTFAPHVPSYKTYSRPEMPVSVRTPTVDQSRKFDNSPMFDQSYLKQAILKWEYIMFE
NYKAFGTPQDLCPLALKEVPTTFSSYTEYFNALYPLLLINTFEEMVSEWLNGRKFEIFLK
VQGIEYRNRIAAATFTASLNAEQEAKQLYLKDDDLVLLWLPENTGAYANDEPDSPEINAH
FGCVVRSNVLSNGGGHLSTLNLTIQTRGNVASVNTQDVRCERIGSLVSTLREFRALCLLQ
KSKMLHPILKPDIKFYMPCPDGPPILDMPEYNAEQAKAISCGVAMVKRKQNTPKILLIHG
PPGTGKSKIIVGMLHRLLSDAESPSVTRYAKSRRPRILLCAPSNAAIDNLMKKIIIAFKE
KCLDIRAPQGNCGDINLVRLGSERTISKDLKLFSLDCQVKKGLEKAQQIRDFDIQRRKEE
LDKKIETLSQQCAKTDKKSAAFEQLNERKLVYLRERENLSQKLKELRNKKQAVQSRILVD
AHVICCTLSTSGVVLLESAFRRLGHEPFCGVIVDEAGQAKETETLIPLLYRCQNLILVGD
PMQLPPTVVSQRAKELGYDQSLMARVWKSLYYQNTQLSPSVFLRVQYRMHPDICEFPSKY
IYDYNLKSDPETAQKLCSSSWPFEAYRVFDVTDGRESKERDSFSNCKEVKLVVLLSKLLG
ENHAKRKEKQPLRVGIITPYNAQKQRIQQAIEKDPDKEFKKYIQVEVDTVDGFQGRETDC
IIVSCVRASNENGSIGFVANRQRMNVTITRAKSSLFILGHLRTLQEHSDWGALVQDAVKR
GATITVTESTFHKFVQKVLKPIHPPRRYSHPPNHMSNPACSDGQRDHRTHARPSDPRLQL
PFPASSEHDGGNRSFSRPRPHSRRASDACLDQSSGRSFPLTLERHQEPHFSSSSRASRK
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggagacttgtcggtggtgtaccgcgtcccccgaaaacgatgtggctgtcaaagaggtc
ctaaagcgctattgcactggtgaaatgacgcagaaagaaatgcatgatgctaatagcgac
ttcatctactgtctagagtgtgtggtgaagtaccacagagcaagagaaatggtcccggaa
ctgcacaagcgtctgtgggaattggagacaactcggctgcttgaagttttccgggaaatg
ttggaggccgatctggaggatgatgacctgtacttcgtcgaagaaggttataacctgcct
gtctccaatgttacacctgaggaatttcacaaccggctgagattcccgcttgtggaagtg
ctgaaatacccttatcttctgtgtcaccaggagctctgtgaaatggtagtgaatgtgtta
tgcaaaatggaggacatgaggaaccctctgccagtgcatgaccagtatcagggaacctac
ctgctcatggtgcaccccaatgaaacagtgcgtcgctgggcaatagctactgccagatca
ttgggcagggtggacagagataactattatgatcttcaggaggtatttgcctgcatgttc
tatgtcattgatttagggatcactgtggactttctaagcacggatgactcttactgctct
ggcaagctcaagatgctacagccacatctctttgactccaaaaataaaaagagttactgg
ctaggtatctgtatgttgctgatgcagctggactcacaagccatggactcgttgttaatg
gggccagaagggcagtctagcattccccaatgtattgtcaataccatgaatgactctaat
aaagatgatgacctagatccattctggcctgcttttcactgtttcttggtcattctagat
cgactgggctcaaagatctggggtcagatagaaccactagatgcttttaaggctatcact
aaagcaggcagctatatggctaaaattgaaaatattcgagagcaaactgcaaggacaagg
gtgaaagtagagcctgaaaatcatgatgatctgttgtcctgcagtcagattgtgtatgac
tgctatactatggagcgagcaagtcgatcatcggactgttcatctgacaacagtgacaca
agtggcaatgcaatctttgaagaaatgagctgcctagttaatgttttacagtctgaaatg
ggccaaggcatgcgtgtatatggtagcacctttctttggtttattccattcgttcgcgct
ctcatggagttgaatgagcttaatagcatatgcgttggagaggttatccattatttggag
aacaatgttgacaagaatgtgctctctggaagaacacagacctgtgacaaagtgacagag
ttcttcatccgcatccttgttgatctaattaaactgcacatgaataacggctacatggaa
agactgtcctattttacccatatatgggtagatatggtgatgcagtgtgctacactttct
gatgacttttgtaataccaggggagcctattcaacttcacactttggtagaggcactctg
atgccagcagtgggtgtgggtgcaatgagtcaagactgcatgaagttaattcgctccatg
ttgaaagaaggggggcggacaggatcggatccggagtctgcacattttctggacctaatt
aaccgacacctgcgctttttctcttctaaagggtggaatctatccaaatctgaatatgat
aatcttaagaaatgcttactcaggcttgtaaaagtaataacggaaagacccaaagtttca
aatgatgttctaccatgtgctccaccaacaccgccatcagatccctctgaaaatgtcatt
tcctacccaaattccacagtgactttgcctctgcagcaggtacaaaccaaagatgcagag
gttggtccatgtggtccggtaggtacaaccaattttattaaggaagagccactgtggaat
catgaggaatgccaaagtttctgtgatggacatgaggaaataattaaggtaaaaaaagaa
ccttgcaacccaatgccaatttcagaatccagatctatggaggggagtcgtattgtagca
ccagagaaattacaagaaattaaatctaggttggcagataagaatttttccatgaaacaa
accattgtaaagggaagattaaaaactgaggatgaacagggtaattgcagtggcttgaaa
gagattagccatgcctcaagtgtaagcccacagccatcaacctcacaatctaagatccct
gactctgccaggcttagcaaatcctcaaaaaagaaattggataatgatgacgatgagccc
cttgatgtccgaatgcatcgcctaaaaagatctaaaaagtctagtgaagaggattcagat
aataccagacagatttcaatacagttgtctagcactgcaaaaccgattcatgcgagtagc
ataaacatttcagatcacagtgtttctttaagtgacaagttattagaaaaccgggtaaag
cgcgacacccttgaggatcttgactctaagagcccaggacgtgattttgacgatttaagt
gaatcacaagtgtttgagtttgaaacacaagcgcacatggtgtcttcctggaatgagcca
cacattgacatcacagatgtgtccaaaaagcacaaacttcagtatgactccaaagcatgt
agcagtcatgatgctgtggagcccatggatactcagcccatctcagatgaagacattgag
aaagcctgtctccaagtggaggtacaaatctgtaaagagcaacagccacaggaaccgatt
tcatcaggcatcccacccaaacctagttccaatgaaaaaagtgatttcattcaacattcc
aaaggtcagactgaaaaaagagtcccgaccgataaaggcaaacgagggctgtgcaaaaag
cctcctgttattgcagccctgagtcaaaaaattaagaagcgtccacatgaccccatatct
aaggatcttgttaaaccaagttcttccacaatgctgacttcatcctctgttgtaccaccc
tttactattgccccttccagaggtacctctgcatcctctgttacacctttacgatccacc
cctgcagtagttccaacaaaaaaggttcgcaaacgtgttgaaccagaacttccagcagag
ctcctggggttaaaaaagaaggaaagaaaagcttttgagttttcacagcgttccttggtc
acgttgggtgaacttcgttcgcatggccagaatgtgcatgttgacgcacaaccgaagtca
aaaagaattcgtcaaccgaaggttgttgcgaagaaaggaaagaagttaattgcatcacaa
gatttgcagtactttagacagagccgtagtatgctcgagaagtcaacatcagccactcct
gttgctgccaaatcataccagcgtcctgtaccagagaccctgcccaaattaaaacctgca
attgaaactatggaggaaccaagagatgaggaggacgattactctttccttccctgctct
cagcctgatcctgagagaaggatggacaataaattgggtaccactgaagtcaatactagt
aatacaaatgactccaaaaatacagttagtgattgggatgagaccaataaaagtaaagag
ttcagttcccttcaaaacaataagtgtgtttccatcacagaaggtaaagaatccaggcat
gaaaatggtcatggtggtgacagttatgatgatgaatggatgtcctttacacaaaatgaa
ccaacggacatggagttatgctctcaaatggaacaaatggaggaacagtatgatgagaaa
cattcaaatatttctgaagcagaaacaagtgtgtcacttaagccagtatcttgcaacatt
attcagaagtcacttcctgatgcttcaactgcatccacttcaaatgaccctttgttgata
aaacctagcacgctcactgagaaaaaagcaaagcctccaacaaagatttatacgtcatgt
tcccgcagtgcctctttggctaaagaaatgggaaaagtagccaaccctctacctgctggt
aatgttactaaggcaaaggttgtacggccaccctcagcaatgccgccaccctcagcaatg
ccgccaccctcagcaatgccgccaccgccaccctcagcaatgctgccaccgccaccctca
gcaatgccgccacactcagccgtgccaccaccaattccaaaatccacaccacagcatgaa
tttagccaaccaattccacccagacccatcctgcacactccaaatcaggtttcaaagccg
tcttttaatgtaacatttgctccccacgtaccttcctataagacttactccagaccagaa
atgcctgtatcagtacgaacaccaacagttgatcaaagtagaaaatttgataattctcca
atgtttgaccagtcgtacctaaaacaggctattttgaagtgggagtacatcatgttcgag
aactataaagcctttgggacgcctcaagacttgtgtccattagccctaaaggaagtacca
acaacgttctctagctatacggagtactttaatgccttgtacccacttctgctcattaat
acgtttgaagagatggtcagcgaatggcttaatggtcggaaatttgaaattttcctgaag
gtccagggaattgaatacagaaatcgcattgccgctgccacttttacagcaagccttaat
gctgagcaggaagcgaagcagttgtatcttaaagatgacgaccttgtgctcctttggctg
ccagagaacactggagcatatgctaacgatgagccagattctcctgagattaatgcccac
tttggatgtgtggtgcgatccaacgtgttaagtaatggaggaggtcatctctctacctta
aaccttaccattcagacgcgtggaaatgtggcctctgttaacacccaagacgttcgctgt
gaacggattggttccctggtcagtactttgcgtgaattcagagcgctgtgtttgcttcaa
aaaagcaaaatgttacatccgattctcaagccagacataaagttttacatgccctgcccg
gatgggccgccgatcctagatatgcctgaatataatgctgagcaggccaaagcaatcagc
tgtggtgttgcaatggtgaaaaggaagcagaatactccaaagattttgttaatacatgga
ccacctggaactggcaagagcaaaatcatagttggcatgctgcacagacttctctctgat
gctgagagtccttcagtgactaggtacgctaagtctcgaagacccagaattctgctctgt
gccccatctaatgccgccattgacaacctgatgaagaaaatcattattgcatttaaagaa
aagtgcttggacatccgtgctccacaagggaactgtggtgacatcaacttggtgcgacta
gggagcgagaggaccatttctaaagacctcaaactcttcagccttgactgccaggtcaag
aaaggtttggagaaagcgcaacaaatacgtgattttgatatccagaggaggaaggaagaa
ctggacaagaagattgaaacactgtctcagcagtgtgccaagaccgacaaaaaatcagct
gcgtttgaacagctgaatgaaagaaagctagtttacttgcgcgaaagggagaacctcagt
caaaagttaaaggagcttcgtaataaaaaacaagccgtgcagtcgcgtattttagttgac
gctcatgtgatctgctgcacgctgagcacaagtggtgttgtcctcctcgaatccgctttc
cgacgtcttggacacgagccattctgcggtgttattgttgatgaggcagggcaggctaaa
gaaacagaaacattgattcctttgctttatcgatgccaaaaccttatcctagtgggtgac
cccatgcagctcccaccaactgttgtttcccagagggccaaagagctgggctatgaccag
tcactgatggctcgggtttggaaaagcctgtattatcagaacactcaactgtcccccagc
gtcttcctccgtgttcagtaccgcatgcaccccgacatttgcgagtttccttccaagtac
atctacgactacaatttaaaaagtgaccctgaaaccgctcagaagctgtgctcatcctcc
tggccgtttgaagcctacagagtgtttgatgtgactgatggaagagagagcaaggagaga
gattcctttagtaattgcaaagaggtcaagctggttgtgctgctttctaagctgcttggg
gaaaatcacgccaagcgcaaggaaaaacagccgctgcgtgttggcatcatcacaccatat
aacgcccagaaacaacgcatccagcaggcaattgagaaggatccagacaaagaatttaaa
aaatacatacaagtggaagtggacactgtggatgggttccagggccgggaaacagactgc
atcattgtgtcttgtgtacgagccagcaatgaaaacggttctattgggtttgtcgcaaat
cgccagaggatgaatgtgaccataactagagccaaatccagtttgtttattctgggacat
ctacgtacactccaggagcacagtgactggggtgcactggtacaggatgcagtgaaacgt
ggcgccacgatcacagtgaccgagtccacctttcacaagtttgtgcagaaggtgctgaaa
ccgattcacccccctcgtagatactctcacccccccaaccacatgtccaatcctgcatgt
tctgatggacaaagagaccacagaacacatgctagaccttcagacccacgtctacaattg
ccttttcctgccagcagtgagcatgatggtgggaaccgaagcttctcacgaccaaggcca
cacagtcgccgggcttcagatgcatgtctagaccaaagctccggacgctcctttcctttg
actttagaacgacatcaagaacctcacttttcttcttcttctagggcatctaggaaataa
DBGET
integrated database retrieval system
