KEGG   Tachysurus vachellii: 132859701
Entry
132859701         CDS       T09596                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
tvc  Tachysurus vachellii
Pathway
tvc03030  DNA replication
tvc03410  Base excision repair
tvc03420  Nucleotide excision repair
tvc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132859701 (rfc2)
   03410 Base excision repair
    132859701 (rfc2)
   03420 Nucleotide excision repair
    132859701 (rfc2)
   03430 Mismatch repair
    132859701 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tvc03032]
    132859701 (rfc2)
   03036 Chromosome and associated proteins [BR:tvc03036]
    132859701 (rfc2)
   03400 DNA repair and recombination proteins [BR:tvc03400]
    132859701 (rfc2)
DNA replication proteins [BR:tvc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    132859701 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    132859701 (rfc2)
Chromosome and associated proteins [BR:tvc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    132859701 (rfc2)
DNA repair and recombination proteins [BR:tvc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     132859701 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    132859701 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 RCF1-5-like_lid AAA_16 Mg_chelatase AAA_24 AAA_11 Viral_helicase1 Rad17 RuvB_N AAA_assoc_2 AAA_19 MipZ nSTAND3 ABC_tran AAA_18 AAA_28 AAA_5 DNAX_ATPase_lid AAA_25 AAA_30 MeaB AMP-binding_C_3 AAA_23 RNA_helicase MCM NTPase_1 SLFN-g3_helicase DUF815 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 132859701
NCBI-ProteinID: XP_060746541
LinkDB
Position
17:complement(15651139..15656580)
AA seq 353 aa
MDVEMKEADGEQSQSDVQSNKKEDATKSSTTTYELPWVEKYRPLKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKARHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQSTHS
GFGFINSENVFKVCDEPHPLLVKNMLEHCVTSNIDEAYKIISQLWSLGYSPEDIIGNIFR
VCKTLQMPEYLKLEFIKEIGYTHMKISEGVNSLLQLAGLLGRLCSKTAAPEAS
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggacgtggagatgaaagaagctgatggcgaacaaagtcagtcagatgtacagagtaat
aaaaaagaagatgctaccaagtcttcaacgaccacatacgaactgccctgggtggaaaaa
tacagaccgctgaagctgaacgaaatagttgggaatgaagaaactgtcagcagactggag
gtgtttgccagagagggaaatgtacccaacatcattattgccggacctcctggcactgga
aaaacaacaagcattttgtgtttggccagagctcttctaggcccagcgatgaaggacgct
gtgctcgagctaaatgcttcaaatgatcgaggtattgatgttgtccgaaacaagatcaag
atgtttgctcagcaaaaagttactctccccaaagcacgtcacaaaatcatcatcctggat
gaagccgacagcatgactgatggagcacagcaagctctgaggagaacaatggagatctat
tcaaaaaccaccagatttgctttagcctgcaatgcatcagataaaattatagagccaatt
cagtcacgttgtgcagtgctgcgctacagtaagctgagggacgaacagatcatgatgcgg
ctgatggaggtggtggagaaggagaacctgcacaccaccaacgatggactggaggccatt
atcttcaccgcccaaggagacatgagacaggcactaaataacctgcagtccacgcattct
ggatttggttttatcaacagtgaaaatgtgttcaaggtatgtgatgaaccacacccccta
ctggttaaaaacatgcttgaacactgtgtcaccagcaacatcgacgaggcttacaagata
atatcacagctttggtcactcggctactctcctgaagatataatagggaacatcttcaga
gtgtgtaagacgttacaaatgccagagtacctgaaactggagtttatcaaggagattggc
tacacccacatgaagatatcagaaggagtgaactctctgctccagcttgctggactatta
ggacgtctctgcagtaagactgcagcccccgaggccagctaa

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