Tachysurus vachellii: 132860072
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Entry
132860072 CDS
T09596
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132860072 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132860072 (cnot6a)
Enzymes [BR:
tvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132860072 (cnot6a)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132860072 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132860072 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
132860072
NCBI-ProteinID:
XP_060747116
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Position
17:complement(19134775..19144198)
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAASGKKSYWAELEISGKVRSLSTALWSLTHLTALHISD
NSLSRIPPDIAKLQNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQDIMNLYLEPDGTRRLLNYLLDNLAGTKRVSSEQTPPRSWVHLKEPD
RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILSCSADIISLQEV
ETEQYYNFFLVELKEHGYEGFFSPKSRARTMSESDRKHVDGCAIFYKTDKFSLVQKHTVE
FNQLAMANSEGSEVMLNRVMTKDNIGVAVLLELRKEMIEQSAGKHLPSMEKQLLLMANAH
MHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDSG
VVEYLSTGGVDGTHKDFKELRYIDCLTNFNCNGKNGTSSSRITHGFKLKSAYENGLMPYT
NYTFDFKGVIDYIFYSQPLLNVLGVLGPLDPHWLHENNVTGCPHPNIPSDHFSLFAQLEL
LLPFSSLVNGLHVPGCR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccagatccaaggcggatgtacactataatgtcaagt
gaggaggcagctagtgggaagaagtcatactgggccgaactggagatcagtggcaaagtg
aggagcctgagcacagcattgtggtctcttacccatctgactgctttgcacatcagcgac
aactctctctcgcgtatccctccagacattgccaaactacaaaacctggtgtacttggat
ctctcgtccaataagatcaggagcttgcccgccgagctaggcaacatggtatctctcagg
gaactgcttttaaataacaaccagttgcgagtcctgccttttgagcttggaaaattgttt
cagttacaaaccttggggttaaaaggaaacccacttgcacaagacatcatgaacctctac
ctggaacccgatgggacacgccggctcctgaactacctgctggacaatcttgcaggcacc
aaacgcgtctcctcagaacagacccctcctcgctcatgggtacatcttaaggaacctgac
aggacacgaccaacagcattgttctctgtgatgtgctacaacgtattgtgtgataagtac
gccacacgtcagctctatggttactgcccttcctgggctctcaactgggagtacaggaaa
aagtccatcatgcaggagatcctcagttgcagtgcagatatcatcagcctacaggaagtg
gagacggagcagtactacaactttttcctggtggagctaaaggagcacggatacgagggt
ttcttcagccccaagtctcgtgccaggaccatgtcggagtctgaccgcaaacacgtggac
ggttgtgccatcttctataagaccgacaagttcagccttgtgcagaaacacacagtggag
tttaaccagctggccatggctaactcagagggctcagaggtcatgttgaacagggtgatg
accaaggacaacattggtgtcgctgtgctcctggagctgcgcaaagagatgattgagcaa
tctgcagggaagcacttgcctagtatggagaagcagctactgttgatggctaacgctcac
atgcactgggacccggagtactcggacgtaaagctcgtccagaccatgatgttcctgtca
gaagtgaagaacattgtggacaaggccacgcgcagcctcaagctctcttctgtgtctggg
gagaccaacgccatccctcttgtcttgtgtgctgacctcaactcactgcctgactcgggt
gtggtggagtacctgagcacaggtggtgtggacggcacccataaagacttcaaggagcta
cgctacatcgactgcctgaccaactttaactgtaacggcaagaacggcacatccagcagc
aggatcacacacggcttcaagctaaagagtgcctacgagaacggcctgatgccttatacc
aactacaccttcgacttcaagggtgtgattgactacatcttttactctcagcctctgcta
aacgtgttgggtgtgctcggcccactggacccccattggctccacgagaacaatgtcact
ggctgcccacaccccaacatcccctccgaccacttctccctgtttgcacaacttgagctg
ctcctgcccttctcgtctttggtcaacggtctccacgtgcctggctgcaggtag
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