Tachysurus vachellii: 132860878
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Entry
132860878 CDS
T09596
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tvc01001
]
132860878 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tvc04054
]
132860878 (ciita)
Enzymes [BR:
tvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
132860878 (ciita)
Protein kinases [BR:
tvc01001
]
Serine/threonine kinases: Other
TAF1 family
132860878 (ciita)
Pattern recognition receptors [BR:
tvc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
132860878 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
nSTAND_NTPase5
nSTAND3
AAA_16
NB-ARC
AAA_25
AAA_22
RsgA_GTPase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
132860878
NCBI-ProteinID:
XP_060748147
LinkDB
All DBs
Position
18:21394307..21406614
Genome browser
AA seq
1146 aa
AA seq
DB search
MVPFKEVLSEVRKVLQEENLLPSLLAQLVEAQIFSAQYYQTFISENLCDVDVDEMARRLA
LPVWEKWDASKVILSSVLMENEPENHEPADIMTNVDHGETPPDRLLDLIVSTPLEEFPFE
EFLDTSYSDEVWDAVADGSEDKATLVCEVYDKISPARKVHKRKRRVEVGRGSEKTPRSKR
SKRDLIPSLPPKSSETAHGFNTTVQEGDFHNNDVSSLIHFPLTIATTASLMPSGAPAMQI
IQTFSPLSSPVIKSILPVGHTYVLVSPQSLTPMPVPQIAPLSPLDGTVAPLELSMFIQPA
SSLSDSASRSQSPSQSAPVPPSKEKSPKEHLPATQDIKKMPVIPENVQIFIKRFKSHLGE
TCSMMQEGMSMESHYIDTPLVQRKLIIRTGKNANKCLEKELVVLSDSERKKGMMHRSHVF
QNCGSNNKHLITVLGKAGMGKSTLIQRLALDWSSGGLQQFQFIFLLNCKVLNLTQSSFSL
KSLLFDSSTCPRCDDSEAVFKHVLAFPENVLVVFDSFDELKDLEGLLQSPATSPTDGNYS
VRQLFSGLFQKRILSGCTVLIVTRPKDVLNQLLRKVDRILEICCFSPKDIEMYVSNYFGD
ESEREDTLRKIKKQKYIFSLCSNPLLCRLTCCVAKHQTSGGLPSTLTDLYQRVLSQCLEL
NDDLQGSRQDFVKLCNVAWDGFKTQNSLLNQNQNQNLLDYGLSSGILMTHSLNAEQSNRQ
VTYFANLFVQNLLSALFLVHSRELNDKTLLAQTTLHQRKKKFQGEWQNVLQQFTMGLLFQ
KNSPPCCRVFQNNTDLQAKRKAVEVHLENLKPGELIPSRLLELFHCVYEAKNVKLAKLLV
KNLPDNLSFCGAQLSPVDHHVVWHLLSQTKGLKRTFSIDLRDTCVPLGGLKELVALDIVA
SFRAPTMDTINLWEDLHRSSDQPSLKNSIKKFTINPLKVSQVSHVEDLVVLVQIHNEKKL
PLCEVESALEDGVPAVRQLHKLEYELGQQHGPEVFLQLVEILPALQSLHHLDLENNKMGD
DEAEQLAGVLSSLSSLKLLNLSQNCIGDGGVQRLSETLPSASSLQSLSLYGNMIGDSGAE
SLASVLPLMTSLLDLDVKYNKFTDVGAKKLGAALKNSSSVTSLQMWNDCIPFGVLEHLQI
QDCRIN
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggtgccttttaaagaggttctttctgaagtgaggaaggtcctgcaggaggagaatctc
cttccttcacttcttgcccagcttgtggaggctcagatcttctcagctcagtactaccag
acctttatttcggagaatctctgcgatgtggatgtagatgaaatggccaggagactcgcg
ctccctgtttgggagaaatgggatgccagtaaagtaatcctctcctcagtgctcatggag
aatgagccagagaaccatgaacctgcagacatcatgactaatgtggatcatggggaaacc
cctcctgaccggttactggacctcatcgtctccactccgcttgaagaatttccatttgaa
gaatttctcgacacaagttactcagatgaagtctgggatgctgtcgcagatggatcagaa
gataaagccacactggtatgtgaagtgtacgacaagatctcacctgccagaaaagtgcac
aaaaggaagcgtagagtagaggttggacgaggatcagagaaaacacctcgctctaaacgc
agcaaaagagatctcatcccttcattacccccaaagagcagtgaaacggcccatgggttc
aatacaactgtgcaggaaggggatttccacaacaatgacgtgtcctcacttattcatttc
ccattaacgatagccaccactgcctctctgatgccatctggtgcgccagcaatgcaaatc
atacaaacattcagtcctctttcttctccagtcattaaaagcattcttccagttggccac
acctacgtgttggtttcacctcagtctctaactccaatgccagtaccacagatcgcccct
ctgtcacctctggacggtacagtggctcctttagagctcagcatgttcatccaacctgca
agctcgttatcggacagtgcgagtaggagtcaatctccgtcccaatcagctcctgttcca
ccctcaaaagaaaaatcacccaaggagcatcttcctgcaacccaggacatcaagaagatg
ccagtgataccggagaatgttcaaatctttatcaagcgttttaaatcacaccttggagaa
acctgcagcatgatgcaagaaggaatgagcatggaatcgcactacatagacacgccgctg
gtgcagaggaagcttatcatcaggaccggcaagaatgcaaacaaatgtttagagaaggaa
cttgtggtgctcagtgactcagagcggaagaaaggtatgatgcacaggagccatgttttc
cagaactgtgggtccaacaacaaacacctaatcactgtcctcgggaaagccggcatggga
aaaagcactttaatccagcgcttggccttggactggtccagcggtggccttcaacagttc
cagtttatctttttactaaattgcaaggttctcaatctgactcagagcagcttcagtctg
aagagtttgctttttgactcgtccacttgtccccggtgtgacgactcagaggccgtcttc
aaacacgtcctcgcctttccagagaacgttcttgtagtttttgacagtttcgatgaattg
aaggacctcgaagggcttcttcagtcacctgctacctcgcccacggacggaaactacagt
gtcaggcagctgttttccggtttgttccaaaaaaggatcctgtcaggttgcaccgtttta
atcgtcacccgacccaaagacgtcctgaaccagcttctgcgtaaagtagaccgaatcttg
gagatatgttgcttttctccaaaggacatagaaatgtacgtctcgaactattttggggac
gaatcagagagagaggatacactaagaaaaataaaaaaacagaagtacattttcagctta
tgctcgaaccctttgctgtgtcgccttacatgctgtgtggcgaagcatcagacgagcggc
ggtttaccgtcgactcttacggatttataccaacgagtgcttagccagtgtctagagctg
aacgatgaccttcagggatccagacaggattttgtgaagttgtgtaacgtggcatgggat
ggatttaagactcaaaactcccttttaaaccaaaatcaaaaccaaaacttactagactac
ggtctcagctctgggatacttatgacgcattcgctaaatgcagaacagagcaaccgccag
gtcacttattttgctaatctttttgtgcagaaccttctaagtgctttgtttttggtgcac
tccagagagttgaacgataaaacactgctggcacagaccacgctccaccaacggaagaag
aagtttcagggagaatggcagaatgtgcttcagcagttcacaatgggattactcttccag
aaaaactcccctccttgctgtagggttttccaaaacaatactgacctccaggcaaaaagg
aaagcagtggaagtccatctggagaacctgaaaccgggcgagctgatcccaagcaggtta
ctggaactgtttcactgcgtgtacgaggccaaaaatgtcaaactcgccaaacttctggtc
aaaaaccttcctgataatctgtcgttttgtggagctcagctctctccagtggaccaccat
gtggtttggcatcttctctcacaaaccaaagggctgaagcggacgttctccattgacttg
agggacacgtgtgttcctctcggtggtctcaaagagctggtcgcgctggacatcgtggca
tcgttccgggcacctacgatggacaccattaacctgtgggaggatctgcatcgcagcagc
gatcaacccagtttgaaaaacagcatcaaaaagtttactataaatcctctgaaggtgtcg
caggtgtctcatgtggaggacctggtggttcttgtacaaatccacaacgagaagaagctg
ccgttatgcgaggtcgagtcggctctggaagacggcgtcccggcggtgagacagcttcac
aagctggagtatgagctcggtcagcagcacggccctgaggttttcctccagctggtggag
atcttacctgctcttcagtctctccatcacctggatctggagaataacaaaatgggagat
gatgaagctgagcagttagctggtgttctgagctcactgtcgtctctgaagctgctgaat
ctttctcagaactgtatcggagacggtggagtgcagcgactgtctgagaccctgccgtcc
gcgtcctcgctgcagagcctcagtctgtatgggaacatgatcggggacagcggagctgag
agcctggcgtcagtgttaccgctcatgacgtctctgctggacctggatgtaaagtacaac
aagttcacagacgtcggagccaaaaagctcggcgctgcgttaaagaactcatcgagtgtg
acatctcttcaaatgtggaacgactgtattccttttggagttttggagcatcttcagatt
caagactgcaggataaattaa
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integrated database retrieval system
