Tachysurus vachellii: 132861053
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Entry
132861053 CDS
T09596
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132861053 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132861053 (tnrc6c1)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132861053 (tnrc6c1)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132861053 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
132861053
NCBI-ProteinID:
XP_060748381
LinkDB
All DBs
Position
18:15717728..15764286
Genome browser
AA seq
1800 aa
AA seq
DB search
MEEKKKKKQEEKKKKEVAQKKAAEKETKVPDSAKPSPAPLPPANPSTTNPSVPSASSSGA
NGKRAPSSTQQQPQSAVQRYPPREVPPRFRQHEHKQLLKRGQPLPPGNLAVVLPSSSSST
VQSFPSQSHPDLPLQSAHSAQYESPHWGHTPINSSATIVTTNNSGWDQLIIDKSDSEEWP
SISHSESHIPAGCPSDTEIINSSTDSMSMATGGSQQGHFPTNHPSKASNSHSGGILSSQS
GASRGWGSGPSPAIAGEGKGDSNSASMGARTWGSSNFNLNLNPNANPSAWPVLGHEGMGV
GGSSGVSNQAPSNICSPPCAPSSGPSSSGNLIGDNGNSAGNSGNGNGSTAWGGMVSNDTA
EPHSSSTNVSFSSEPQNLNTEGPNHTKQEPMSPANSMPNWNVNPVGMGSFVQSSTGSSQV
NGEEGSVWGNGDAKSASSSKDSGWDSGSGWGQGVASATPGWGQATSNGDWGKHSTEPKGW
ESAGSPTQEQPLSSWGSGANAPASEGSSDSMDGHSHRRERSRDMAPPLLPAQDMDPRVLC
NTGWGQTPVRQHTAWETEEAAHSNNKNDAGTEAWGSSSNAPHMAQPSSHGSVNPSSRPDS
GGKSDAHRPAAATPSGWGPSPTQTCSGWGDNAKKPPIGSGGWGNPPQGGHSGNLQKSGQS
WGSEDKSSNWDDSHSKAKSQGWGENPKPSHNWSSERGGDSGAGDEWGDSGEGKKNGPSSS
SWEGDGTGWKESPRSWGKPSPGGGWGDEQRSNASTQGWRNKSQEGGNGSSTSASMGSWGG
SGSVKSGSGWGGSNGGGVKHNHASEPTGWEEPSPPSIRRKMEIDDGTSAWGDPSSYNKTV
NLWDRNNPGMQSKTGSGNANNPPSNHHHHTHHNQPPLQGHGHGGPAATNSHITPDNTSPH
QVVAPHNRAPLMTTGWGEMPNVHSKPEPSWGEPVPSPASVDNGTSAWGKPPGGWSDSSPE
GYGRGGGPPGSAPCKPASKTMQEGWGGGEDMNLSTGQWEQDEGDMWNSTASQESSSSCSS
WGNQPKKGSQKTKVPNKQDDAWIMTRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMTALL
EKKTELDKRGLGISDYSNGLINKPMSCRPSIISKDSSSDRPAFMDKDGGLADDAQTSPFM
PSPSLKLPMASAALPSQSIGVTMQNLNRQMQSGMFGSSGTAQTRALQQPPPQPAVPPLNS
SQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQLYHLQLAYQR
LQIQQQMLQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQVLLVKQQQQQQPPPS
HPSLHPNTGKSALETFSSHQQASGLTVSDLPTKEPQSSPNTFSSYTLSGLNPNMNVNCME
VGGLSMKDSPQPQSRLSQWTHPNSMENLSGSSSPMEPGHSKHGAISAGPNLGASGKPTMD
DSYNPYNLMQGTDSPASSLVTPDSWGQGKNNSDKMSNGTNISWPPEFCPGVPWKGLQNID
PETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSGGKLPDMKSTWSPGPISHTQASLSHE
LWKVPQGPRNTTAPTRPPPGLTNTKPSSTWGGNSLGLVPGWSGSYSSGTTWSTDSSNRTS
SWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKDEAGKAQKSLHMCV
LGNTTILAEFAGEEEVNRFFAQGQSLTPTTSWQANPGTNQTRLGGGASANSHPIGHWNTA
GLGGGGAGSAAKAGNELLWGGVQQYSSLWGPPSTEEGRVVGSPTPINTLLPGDLLSGESM
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaagaggaaaagaagaaaaaggaagtcgctcagaaa
aaggctgctgaaaaggaaaccaaagtgccagactctgccaagccaagccctgcccctctt
ccccctgccaaccccagcactaccaacccctctgtgccctcggccagcagcagtggtgcc
aatggcaagcgtgcgccctccagcactcagcagcaaccgcagtcggcagtacagcgatac
ccacctcgagaggtcccaccacgtttccgccaacacgagcacaagcagctactgaagaga
ggacaacctctgcctcctgggaacctcgctgttgtgctgccatcctcaagcagttctact
gtgcagtccttccccagccagtcacacccagacctgcccttgcagagtgcccattcagca
cagtatgaaagtccccactggggacatacaccaatcaacagcagtgctactatagtcaca
accaataacagtggctgggatcaactgattatagacaaaagtgattctgaggagtggcct
tctatttctcacagcgaaagccacatccctgcaggatgcccatcagatactgagattatc
aacagcagcacagacagcatgagtatggccacaggaggcagccagcaaggacactttccc
actaatcatcccagtaaagccagtaacagccactcaggaggtatcctctccagccagagt
ggggccagtagaggctggggctctggtccatctcctgccattgctggagagggaaagggt
gatagcaacagtgcatcaatgggagccaggacctggggctcctccaactttaacttgaat
ttgaatcccaatgctaacccctctgcctggccagtcctgggacatgaggggatgggcgtg
ggtggcagctctggagtatccaaccaagctccgtctaatatctgcagcccaccgtgtgct
ccctcctctggaccgagcagtagtggaaatttaattggcgacaatggaaattctgctgga
aactctggtaacggtaatggcagcaccgcttggggtggtatggtgtctaatgacaccgct
gagccacactcctcttccacgaatgtgtcttttagctctgaacctcagaaccttaacact
gaaggaccaaatcacactaagcaggagcccatgagccctgccaatagtatgcctaactgg
aatgtcaaccctgttggcatgggctcttttgtccagtcttcaacaggaagctcacaggtc
aatggggaggaggggtctgtgtggggtaatggagatgccaaatctgccagtagctctaag
gactctggatgggattcaggaagtggttggggtcaaggagtagcttcagccacccctggc
tggggacaagccacatccaatggggactggggcaagcattccactgaacctaaagggtgg
gagtctgcaggatctcccactcaagagcagccactaagttcttggggcagtggggctaat
gctccagctagcgagggaagcagtgacagcatggatggtcattctcacaggagggaacgc
tcaagagatatggccccacctctcctgcctgcccaggacatggacccaagagttctgtgc
aacacaggatggggacagaccccagtgcgtcagcacacagcatgggagacggaagaagcc
gcacactcaaataacaagaatgatgctggtacagaagcatggggctcatcttcaaatgca
cctcatatggcacaaccatcatctcatggtagtgtcaatccaagttctcgacctgattct
gggggcaagagtgatgcacatcgccctgcagcagcaactccatcaggctggggaccgtcc
cccactcaaacctgctctggatggggtgacaatgccaagaaaccccctattggttctggg
ggctggggcaacccaccacaaggaggccacagtggcaacttgcaaaaaagtgggcagtct
tggggctctgaagacaaatcttctaattgggatgactcccattccaaggctaaatctcag
ggttggggagagaaccccaagccatcccataattggagcagtgagcgaggaggggacagt
ggagctggagatgagtggggtgactctggagaagggaagaagaatgggccgtccagctct
tcctgggagggagatggaacagggtggaaagaaagccctcgtagttggggaaagccatcc
ccaggtggtggatggggagatgaacaacgctccaatgcctcaacacaggggtggcgcaac
aagtctcaggagggtggcaatggcagcagtactagtgcgagcatgggttcatggggagga
tcaggctctgtcaagagtggttcaggttgggggggaagcaatgggggaggagtaaaacat
aatcatgcttcagagccaacaggatgggaagagccatccccaccgtccatccgacgcaag
atggaaattgatgatggtacctcagcttggggtgatccaagcagttataataagacagtt
aacctctgggacaggaacaatcctggaatgcagagtaaaacaggctctggaaatgccaac
aatccccccagcaaccatcaccaccatacccaccataatcagcctccgttgcagggccat
ggacatggagggccagctgcaaccaacagccatatcactcctgacaatacaagcccgcac
caagttgtggctcctcataacagagcacccctgatgacaacaggatggggggaaatgcct
aatgtccactccaaacctgagccttcatggggagagcctgtaccttctccagcaagcgtg
gacaatggcacatcagcctggggcaaaccccctgggggctggtctgacagtagccctgaa
ggctatggccgaggtggaggcccaccaggatctgccccctgcaaaccagcctctaaaact
atgcaagaaggctggggaggtggagaggacatgaacctgtcgacagggcagtgggagcag
gatgagggtgacatgtggaacagtacagcctctcaggagagcagctcatcctgcagttct
tggggcaaccagcccaagaaaggttctcagaagacgaaggttcctaataaacaagatgat
gcttggattatgacccgtctgattaagcagctgaccgatatgggtttccctagagaccct
gcagaggaggctttgaagagcaacaatatgaacttggaccaggctatgactgccctgtta
gaaaagaagactgaattagataagcgagggttgggaatatctgactacagtaatggcctc
atcaacaagccaatgagctgcaggccttcgatcatctccaaagactcctcctcagaccgt
cctgccttcatggacaaggatgggggattagcggacgatgcccaaacttcaccatttatg
ccttctcccagcctgaagctcccgatggctagtgctgccctccctagccagagtattggg
gtcacaatgcaaaacttgaacagacagatgcagagtggcatgtttggcagtagtggaaca
gcacaaacccgggccctgcagcagcctcctcctcagccagcagtgccacctctcaactcc
tcccagcctagtctacgtgctcaagtgcctcagtttctctcccctcaggttcaagcacag
ctcttacagtttgcagcaaaaaacattggtctcaaccctgcacttttaacctcaccaata
aaccctcagcatatgaccttgttgaaccaactctaccatctgcaactggcataccagcgt
ttacaaattcaacagcagatgttgcaggcacagcgtaacgtttctggccctatcagacaa
caggagcagcaagttgcacgtacaatcaataacatgcagcagcagatccagcaacaccag
cggcagctggcccaggttctgctggtaaagcagcagcagcagcagcagcctcctccctct
catcccagcttgcatcccaacacaggcaaatcagcactggaaacgttttcatcacaccaa
caggcatcaggcctaactgtctctgatctgccgaccaaagagccgcagtcgtctcccaac
acattctcctcttacactctctctggactgaaccccaacatgaatgtaaactgcatggag
gtgggaggtctgtccatgaaggactctcctcagcctcagtcgcgcctgtcacagtggacg
caccccaactccatggagaatctctctggcagctcctcacctatggaacctggccacagc
aagcatggtgccatctctgcaggtccaaaccttggtgcttccggtaaacccactatggac
gactcctacaacccgtataacctgatgcagggcactgactctcctgccagttcactggtg
accccagacagttggggccagggcaagaataatagtgacaagatgtccaatgggaccaac
atcagctggccaccagagttctgcccaggagtgccctggaaaggactacagaatattgat
cctgagactgaccccaatgtgaccccaggaagtgttcccagtggccccaccatcaacacc
aacattcaggatgtgaaccgctacctactcagagacaggagtggaggcaaactgccagac
atgaaatccacttggtcgccaggacccatctcacacacgcaggcctcgctgtcccatgag
ctgtggaaggtgccgcagggaccaaggaacactacagcccccacccgtcctccacctggc
ctgaccaataccaagccctcctccacctgggggggcaacagcctaggcttggtgccgggc
tggagtggttcttactcttcaggtaccacatggagcacagacagctccaacaggacaagc
agctggctggttctaaggaaccttacaccccagattgacggctctactctgcggacgctg
tgcatgcagcacggccccttaatcacattccacctcaacttgacgcagggcaacgccgtg
gtgcgctacagctccaaggacgaggctggcaaagcccagaagtccctacacatgtgtgtg
ctgggcaacaccaccatcctagcagaattcgctggagaggaggaggtgaaccgcttcttt
gcacagggtcaatccctcacacccaccaccagctggcaggccaacccgggcaccaatcag
acgcggctggggggtggagcatctgccaattcgcaccctattggccactggaacaccgcc
ggcctgggaggaggcggagctggcagtgcagctaaggcaggcaacgagctgctatggggg
ggcgtacagcagtactctagcctttgggggccgcccagtacagaggagggccgagtggta
ggcagcccaacccctattaacacgctgcttccaggagacctgctgagcggagagtccatg
tga
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integrated database retrieval system
