Tachysurus vachellii: 132862205
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Entry
132862205 CDS
T09596
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
tvc
Tachysurus vachellii
Pathway
tvc04510
Focal adhesion
tvc04512
ECM-receptor interaction
tvc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132862205 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132862205 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132862205 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tvc00535
]
132862205 (col9a3)
Proteoglycans [BR:
tvc00535
]
Extracellular matrix (ECM) proteoglycans
Others
132862205 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132862205
NCBI-ProteinID:
XP_060750104
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Position
19:complement(1808569..1837466)
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AA seq
679 aa
AA seq
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MAMFSALGFLLLCQLLASSLAQPQLPPPDSRGPPGPPGLPGKDGTDGKPGPAGLPGKPGP
KGKAGIPGIAGTPGLSGLPGIDGLPGPDGPQGKDGPPGPRGDAGPPGPPGPPGRGRPGAP
GLPGANGLPGGVGPQGPPGPEGLPGLPGLPGPDGPPGLPGALPEGNGDALCPAICPPGPP
GPPGMPGFKGHTGHKGDKGEPGKDGEKGEQGPPGPSGIPGTVGLQGPRGLRGLTGPVGVV
GDRGLPGFRGKPGIPGVVGKTGDAGEKGPVGFKGPKGEIGKIGPKGLPGHLGPKGEPGMP
GRDGKDGAQGYDGEKGDAGKPGVSGEKGPNGLPGLPGKAGVKGARGVVGDQGKTGEEGPA
GEPGIPGEIGIPGERGEAGPRGIAGGIGLIGNPGPQGVKGFQGIKGALGDPGLPGPTGLR
GDFGDRGPTGASGPKGEIGMAGSDGLPGENGEAGPFGPPGQKGEPGKTGELGPKGVTGPQ
GETGPRGLPGKPGQMGFHGEPGPPGVAGKTGVPGKLASEQHIRELCGGMIDDQIAQLAAH
LRRPLSPGAVGRPGPAGPPGQQGEPGSMGLPGSRGPPGYRGLPGDLGDPGPRGDAGEQGD
KGTVGKAIDGPVGDQGEPGLQGVHGFVKDGRDGAPGDPGEPGEPGRAGSTGHQGPPGICD
TTACQGAAPHGKSSNPKNH
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttctcagctctgggctttcttcttctctgccagcttttggcatcatccctc
gctcagccacaattaccgccacctgattctcgtgggccaccaggaccaccaggactcccg
ggcaaagatggcaccgatggaaaaccaggaccggccggacttcctggtaaacctggacct
aaagggaaagctggaattccaggaatcgcaggaacacctggactttctggacttcctgga
atagacggtctaccgggtcctgatgggcctcaggggaaggacggacctccaggaccaagg
ggcgacgcaggacctcctggaccacctggacctcctggcagagggagacctggagctcct
gggctgcctggagctaatggactgcctggtggtgtaggacctcagggacctccaggacca
gaaggacttccaggacttccaggtcttccaggtccagatgggccacctggtttacctgga
gcgcttcccgagggaaatggtgatgcactgtgtcctgctatctgtccaccaggacccccg
gggcctcctggaatgcccggtttcaagggacacacaggacacaaaggagacaaaggagag
ccagggaaagatggagagaagggtgaacaagggccacctgggccttctggaatcccagga
actgttggtctacagggacctcgaggtttgagaggacttacaggtccagtgggagtcgtc
ggagacagaggtttgccaggtttccggggcaagcccggtattcctggtgtcgtcggaaaa
acaggtgacgccggagagaaaggacccgtgggttttaaaggacctaagggagaaattggt
aaaataggccctaaaggtctgcctggacatctgggccctaaaggagaacctgggatgcca
ggcagagatggtaaagatggcgctcagggatacgacggtgaaaaaggtgatgcagggaag
ccgggagtttcaggagagaaaggacccaatggtttacctggtttgccaggaaaagctgga
gtaaaaggtgccagaggagttgttggtgatcaaggaaagacgggagaagaaggaccagcc
ggagagccaggtattcctggtgagattggcattccaggagaaagaggtgaagcaggaccc
agaggcatcgctggaggcattggattaattggaaatcctggacctcagggagtcaaagga
ttccagggaattaaaggtgctcttggagatcctggtcttccgggtccaactggactgaga
ggggactttggagaccgaggaccaacaggggcttcaggaccgaaaggcgagattggaatg
gctggaagtgacggcttgcctggagagaacggagaagcaggtccattcggtccacctggc
caaaaaggagaacctgggaagactggtgagctgggtcctaaaggagtaacaggaccacag
ggagagaccggaccaagagggctacctgggaaacctggtcagatgggtttccatggagaa
ccgggtcctcctggtgtcgctggaaagactggtgttcctggaaaactggcaagtgaacag
catatcagagaactctgtggtggcatgattgatgaccagattgctcagctggctgctcac
ctgaggagaccattatctccaggagctgtgggtcgaccgggtccggccggacctcctgga
caacaaggagaaccaggatcgatgggacttcctggatctcgcggtcccccaggatacaga
ggacttccaggagatcttggagaccctggtcctagaggtgatgccggtgaacagggtgat
aagggaaccgttggaaaagccatcgatggcccagttggagaccaaggagaaccgggtctc
caaggagtacacggctttgttaaagacggacgtgatggtgcacctggagatccaggtgag
cctggggaacctggcagggcaggaagtacagggcatcaaggacccccgggaatctgcgac
acaacagcgtgtcagggcgcggcgcctcatgggaaatcatccaaccctaaaaaccattaa
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