Tachysurus vachellii: 132862892
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Entry
132862892 CDS
T09596
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132862892 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tvc01009
]
132862892 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tvc04515
]
132862892 (pcdh1a)
Protein phosphatases and associated proteins [BR:
tvc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132862892 (pcdh1a)
Cell adhesion molecules [BR:
tvc04515
]
Cadherins
Protocadherins
132862892 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
132862892
NCBI-ProteinID:
XP_060751204
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All DBs
Position
20:1602571..1672260
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AA seq
1184 aa
AA seq
DB search
MDFSVGLYLLWAIVLNFGRGTLGNIVYRVREEQPPSTLIGSLAADQGLPDSGHLYKLEVG
TPYLRVDGKTGEIFTTEIPIDRETMKDCRMKGKPCFLEFEVSVTDLILNQSPRLIEGRIE
VLDINDNTPQFPSPVLTLTVQENTHMGATFSIPLATDKDTERNGVADYTLTAGPEAVALF
GLQVADDRGEKLPQLIVMGNLDRELKDSYDLTIKVVDGGSPSRYSSALLRVVVTDANDNA
PKFEKSSYEAEVSENSPVGHSVLQVKANDSDLGPNGEIEYIIHQASDPVPKLLQIDRSTG
IIYVKGPLDREEINSLKFHVIARDRGPSPKSSTTYVSVEVTDQNDNAPAVEIRGIGLRTH
SDGVANIPEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPAGDSSIDNKKKYF
LQTTTPLDFERVREYRVEIVAVDSGNPALSSTNSLKVQVTDINDNSPIFSPPVFEIDFAE
ENQPGEKVLDVIAVDADSGTNAELIYSIVADSSTRGLFEIDPSTGEVRARSPLDREHKER
YEFRVTATDKGVPSHKGTATVVINVLDRNDNDPKFMLSTYSFSVLENMPPLSPVGMVTVL
DMDKGENSQVQLSVEPDVGKFVVQNGTGTILSSISFDREKESSYSFRLKAVDGGEPPRSS
YVGVTINVLDENDNAPVVTKPSNSSFKPLSPLAAPDTVVEVVEAEDIDSGSNAELVYSIA
GGNPHELFYISPSDGEIKLSKELTRKHGGLHRLVVKVSDRGKPSRHAIALVHIYVNETIS
NISLVEGLVGHSLYTPLDTDIAGDPDYGLAAQRSNILYGSLAGVAGVVMVIIVVVFIRHR
LQRETKSGYQAGKKETKDLFAPKQGPKSIKGKKGRKGKPPKSPKPLGEDEEVSLQKSLKF
NIDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPATN
TFVGTERDDNSTGSDQYSDYSYKTNQPKYSTKSLPHRRVTFSTANPVQDAQDSSQQSYYD
SGLEESETPSSKSSSGPRLGPLALPEEHYERTTPDGSIGEMEHPENDVRSLPDVAMTGTC
SQECSELGHSDACWMPGQPSPARKTRTLPKLSTFVPYQERGGTLGRLANGEPRPRLPPSR
SVYAPSDHAPNNHVPMEEVPLSVTSEFPPTSPTSNHAPKREIYL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtgggattgtatctgctatgggcaatagtgttgaactttgggcgtggc
acactgggtaatatcgtgtaccgggtgcgtgaggagcagccgccaagcaccctgataggc
agtctggcggctgatcagggcttaccagactctggacacctgtacaagttggaggtgggc
accccttacctgcgagtggatggaaaaacaggggaaatatttaccactgaaatccccatc
gacagagagacaatgaaggactgtcggatgaaaggaaagccatgttttctggagtttgag
gtttctgtcacagatctcatcctgaaccaaagcccccggctgatcgagggacggatcgag
gtgcttgacatcaacgataacaccccgcagtttccatcacctgtcctcactctcactgtg
caagagaacactcacatgggagccaccttctctatcccgctggccactgacaaagataca
gagcgtaatggtgtagccgactataccctcactgccggaccagaggctgttgctctcttt
ggcctacaagtagcagatgacaggggtgagaaattgcctcagctcattgtgatgggaaat
ctggacagggagttgaaagactcctatgacctgaccatcaaagtagtggatgggggaagc
ccatctcgctacagtagtgccttgctgagagtcgtcgtcactgatgccaatgacaacgca
cccaagtttgagaaatcgtcctatgaagctgaggtttcagaaaatagtcctgttggacac
tcagtattacaggtcaaggccaatgactcagatctgggaccaaatggtgaaattgaatac
atcattcatcaagccagtgacccagtgccaaaactgctacagattgaccgttccacaggc
atcatatacgtaaaaggcccattggatcgtgaggagatcaacagcttgaagtttcatgtt
attgcacgggacagaggtccctcacctaaaagctcaacgacgtatgtttctgttgaggta
actgatcagaatgacaatgcacctgctgtggagatccgtggtattggtcttaggacccat
agtgatggcgttgcaaacatcccagaggacatgccagtgggcactgcggtagctctggtg
caagtgtccgataaggatgagggagaaaatgctgttgtgacttgtgtggtagcaggagat
gtcccattccagctccgaccagctggtgattcctctattgataataagaagaagtacttt
ctgcagaccaccacaccactagactttgagagagtcagggagtaccgggtggagatagta
gctgtggattcaggcaacccagctctgtccagcaccaactccctgaaagtccaggtgacc
gatattaatgacaattctcccatattctcacctccagtgtttgaaatagattttgctgaa
gagaatcagcctggagagaaggttcttgatgttattgccgtagatgcggacagtggcacc
aacgcagaactcatctacagcattgttgcagattcatcaaccagggggctctttgagatt
gaccctagcacaggtgaagtacgagccaggagcccacttgaccgtgagcacaaagaacgt
tatgagttccgtgttactgcaaccgataaaggtgttcctagccacaagggtaccgctact
gttgtgatcaatgtactggataggaatgataatgatcccaagtttatgcttagtacctac
agcttctctgtactggagaacatgccaccactaagcccggttggcatggtgactgtatta
gatatggataaaggagaaaattcccaagtgcagctctctgtcgaaccagatgttggaaag
tttgtagtacagaacggaacaggaacaattctgtcaagtatatcctttgaccgggagaaa
gaaagcagctacagtttccgactcaaggcagtagatggaggagaaccccctaggtcatct
tatgttggtgtgaccatcaatgtacttgatgagaatgacaatgcacctgttgtcaccaaa
ccttccaattcttctttcaaacctctgtctcccctggcagcacctgatactgtagttgag
gtagtggaggcagaagacatagactctggctctaatgctgagctggtctatagtattgct
ggggggaacccacatgagctcttctatatctctccctctgatggagagatcaaactaagc
aaggaactgactcggaagcatggaggtctgcatcgcttggtggttaaggtgagtgatagg
ggtaagccttcacgccatgcaattgccttggtgcacatttatgtcaatgagaccatttcc
aatatcagcctagtggaaggcctagtagggcatagcctatacactccactggacacagac
attgcgggtgaccctgactatggtctagctgctcagagaagcaacattctttatggtagc
ttggctggtgtggcaggagttgtaatggtaattatagtggtagtcttcatcagacatcgc
ctccaaagagaaaccaagagcggttatcaagctggcaaaaaggagactaaggacttgttt
gcaccaaaacaaggaccaaagagcattaagggtaaaaagggaagaaagggaaagccacca
aagtcacccaaacctcttggggaagatgaagaggtcagcctccaaaagagtctgaagttc
aacatcgatggggttaatgacagccctaggatccacttgcccttgacctacccacctggc
agccctgacttgggcaggcattaccgctcgaattcacccttgccatccatccaacttcag
gcccagtctccatctgcttcccagaagcatcaggctgttcaggagctccctgccaccaat
acctttgtgggaacagaacgagatgacaactctactggatctgaccagtactcggattac
agttacaagaccaatcagccgaaatacagcacaaaatcgctgccgcaccgcagagtgacg
ttctccaccgccaatccagtccaggacgctcaggactcgtcccagcagagctactacgac
agcggcctggaggagtcggagacacccagcagcaagagctcgtcagggccacgcctcggc
ccgctggcactgcccgaggaacactacgagagaaccacgcccgacggcagcatcggagag
atggagcaccctgaaaacgatgttcggtcgcttcctgacgtggccatgacgggaacctgc
agtcaggagtgcagcgaactcggccactcggacgcctgctggatgccgggtcagccttca
cctgctcgcaagacgcgcacgctgcccaaactctccaccttcgtgccttaccaggagaga
ggagggactctgggacgactggccaacggtgagcctcggccccgccttccaccttcgcgc
agtgtctacgcccccagtgaccacgcccccaacaatcacgtcccgatggaggaggtgcct
ctgagcgtcacctccgagttcccgcccaccagtcccacctctaaccacgcccccaaacgg
gaaatatacctgtaa
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