Tachysurus vachellii: 132863264
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Entry
132863264 CDS
T09596
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
tvc
Tachysurus vachellii
Pathway
tvc04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
132863264 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tvc04131
]
132863264 (rabgef1)
Membrane trafficking [BR:
tvc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
132863264 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
132863264 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
DUF3492
Motif
Other DBs
NCBI-GeneID:
132863264
NCBI-ProteinID:
XP_060751970
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All DBs
Position
20:408752..420617
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AA seq
535 aa
AA seq
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MSQRSERRGIHVDQSELLCKKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWELAEK
LQREEDAAYASSHGPQSQPSLTPFSKFEEKKTNEKTRKVTTVKKFFSPSSRSTAKKEKGR
DEEREKEREREKERGEKVQGRRESHGETLLRDLKGIFTHSWEIVSPTEESHEAKTHSPSF
VRQSSVETDQVSREFVEFLRSLKPGREIHKQSRAFVESMGNKKDLGADELSECVQDFYQN
MSDRLLSHFKGSSEKVERVMDQVEKYIMTRLYKSVFCPETTDDEKKDLTTQHRIRALHWV
TIQMLCVPVDEEIPEAADSVVKAITDIIEMDSKRVPRDKLACITSCSKHIFNAIKVTKKE
PASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMSGEDGYYFTNLCCAVAFIEK
LDAHSLNLSVEDFERHMCGGCGSGEVSPRRRSESASPWPVELLSALQKRQQQVLAEAQDL
QVELQRWQEGVACEVQDILDKYPLEIKKHAAHTIDSENEENDRLPPPLQPQVFAG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcgatctgagcggcgagggatccatgtggaccagtcggagctgctgtgtaag
aagggatgtggttactatggtaacgcggcctggcaggggctgtgctctaagtgctggagg
gaagagtaccagcgtgcacgacagaaacagatccaggaggactgggaacttgctgagaaa
ttacagagggaggaagacgcagcgtacgccagcagtcacggccctcagtctcagccttct
ctcactcctttctccaagtttgaggagaaaaaaaccaacgagaaaacacgcaaagtgaca
acagtgaaaaagttcttcagcccatcatcacgcagcacggccaagaaagagaaagggagg
gatgaggagagagagaaagagagagagagggagaaagagagaggagagaaggtgcagggc
aggagggagagtcacggagagacactgctgcgagatctgaagggtatatttacacactcg
tgggagatcgtgtctccgactgaagagagtcatgaggcgaagacccacagtccgtcgttt
gtgcgtcagtcgagtgtggagacagatcaggtgtccagggaatttgtggagttcctgagg
agtttaaaacctggacgagaaattcacaagcagagccgagcctttgtggagagcatgggg
aataaaaaggacctcggtgctgacgagctctcagagtgtgtgcaggatttctaccagaac
atgtctgaccgtctcctctctcactttaaaggttcctctgagaaggtggagcgagtgatg
gaccaggtggagaagtacatcatgactcgtctctacaagagtgtgttctgtcctgagacc
actgacgatgagaagaaagatctgactacgcagcacaggatccgggcattacactgggtg
accatccagatgctgtgtgttcctgtggatgaagaaattccagaagcagctgatagtgta
gtaaaggccattacagatataatcgagatggactcgaagcgtgtgccgagagataagctg
gcctgcatcaccagctgcagcaaacacatcttcaacgccatcaaagtgacgaagaaggag
ccggcgtcggccgacgatttcctccctacactcatttacatcgtgctgaaggccaacccg
ccgcgcctgcagtccaacatccagtacatcacacgcttctgcaacccgagcaggctgatg
agcggagaggacgggtactacttcaccaacctgtgttgtgcggtggcgtttatcgagaag
ctggacgctcactcactcaacctgagcgtggaggattttgagcgtcacatgtgcggcggc
tgtggatccggtgaggtttccccacgcaggagatccgagtcggcgtccccgtggccggtc
gagctgctctcggctctgcagaaacggcagcagcaggttctggcggaggcacaggatctt
caggttgagctccagcgctggcaggagggcgtggcctgcgaggtgcaggacatcctcgac
aaatatccgctggagatcaaaaagcatgcagcacataccattgattctgagaacgaggag
aacgaccggctgcccccacccctgcagcctcaagtgttcgccggatag
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