Tachysurus vachellii: 132863413
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Entry
132863413 CDS
T09596
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tvc
Tachysurus vachellii
Pathway
tvc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132863413 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132863413 (msh2)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132863413 (msh2)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
132863413
NCBI-ProteinID:
XP_060752189
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Position
2:10144732..10154509
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AA seq
938 aa
AA seq
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MAVQPKQNLCMDSASESGFLNFYFSMPEKPDTTVRIFDRSDYYTVHGKDANFAAKEVFKT
NGVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVRQYRVEVYRNKTGSKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGLGEGAAGVVGIRIGTGSDGQRVVGVGYVDSILRKLGVCEF
PDNDQFSNLEALLVQIGPKECVLPAGDTSGDLGKLREVVQHGGILFSDRKKAEFTTKDIV
QDLNRLLKAQKGETVSSAALPEMEKQIAMSSLAAVIKYLELLSDEANFSSYKMTTFDLSQ
YMRLDNAAVKALNLFQASSDDPTGTHSLAGLLNKCRTPQGQRLVSQWLKQPLMDKNKIEE
RLDLVECFVEDSELRQSCHEDLLRRLPDMNRLAKKFQRQNANLQDCYRVYQAVGQLPGLV
LALERHSGKHQVLLNAAFITPFNDLVSDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTL
SELREDMDQLEKSMQAALNSAARELSLDAGKTIKLESNAQIGYYFRVTCKEEKTLRNNKK
FTTLDVQKNGVRFTNSKLSSLNEEYTKNREEYEEAQNAIVKEIISIAAGYVDPLQTLNDV
IAQLDAVVSFAVVSHAAPVPYVRPTILEKGSGRLILKGARHPCVEAQDDVAFIPNDVTFT
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDEAEVSVVDSLLARVGAGDSQ
IKGVSTFMAEMLETASILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTALAQQVTTVNNLHVTALTTDNTLTMLYRVKPGVCDQSFGIHVAELANFPK
HVIAYAREKALELEEFQDVSREDQDAGPEAKKRCLEKKDGEKIIEDFLGKVKALPVQDMT
DEAIKAELRKLKAEVVVHNNSFVNDIVARIENAKTTLA
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcaaccaaaacagaacttgtgtatggacagtgcgtccgaaagcggcttccta
aacttttatttttccatgccggaaaaaccggacactacggttagaatatttgaccgcagc
gattactacaccgtgcatggaaaagatgcgaactttgctgcaaaagaagtctttaagacc
aatggagttattaaaatgctcggtgcaggcagcaggaggctggagagtgtggtgctcagt
aagatgaacttcgaggcgtttgtgagagatttgctgttggtcaggcagtaccgtgtggaa
gtgtacaggaataagacgggaagcaagagcagcaaagatcacgactggcaaatagcctac
aaggcctctccaggaaacctgacccagtttgaagaggttctgtttggtagcggaggaggt
ttaggggagggggctgctggagtggtcgggatccgcattggaacaggaagtgatggacag
cgtgtcgtgggtgttgggtatgttgacagcatactccgaaagctcggggtgtgcgagttt
ccagataacgaccagttctccaatctggaagctctccttgtgcagattggacccaaagag
tgtgtgcttcctgctggagatacatcaggcgatctgggtaaactaagagaggtggtgcag
catggaggtattctcttctcagacaggaagaaggcagagtttacaaccaaagacatagtt
caggatctgaaccgtttactgaaggctcagaagggagagacagtatctagtgctgcactc
ccagagatggagaaacagattgctatgtcctccttggctgctgtcatcaagtatctggag
cttctttctgatgaggccaacttcagttcctacaaaatgaccacatttgacctcagccag
tacatgcgactcgacaacgctgctgtgaaggcgcttaacctcttccaagcttcctctgat
gatcccacaggtacacactccctggcaggacttttgaacaagtgccgaacacctcagggc
caacgtctggtcagtcagtggcttaaacaacctctaatggacaaaaacaagatcgaggaa
aggctagaccttgtggagtgttttgtggaggactccgagctgagacagagctgccacgag
gacctgctgcgtcggttgcccgacatgaatcgcctagctaaaaaatttcagcgtcagaac
gccaatctgcaggactgttatcgtgtgtaccaggctgtgggtcagctgccaggcctggtg
ctggccctagagagacattctggcaaacatcaagtcctgttgaacgcagcgttcattaca
cccttcaatgacctcgtctctgatttctccaagtttcaggagatgatcgaaactacgctg
gacatgaaccagattgagcaccatgaatttttggtaaaaccctcctttgaccccacactg
agtgaactgagggaggacatggaccagctggagaaaagcatgcaggcagctttaaacagt
gcagcccgagagcttagtttggatgcaggcaaaacaataaagctggaatccaatgcacag
attggatactacttccgtgtcacctgcaaagaggagaaaaccctgcgcaacaataagaaa
ttcacaaccttggatgtgcaaaagaacggagtgcgtttcaccaacagtaagctgagctct
ttgaatgaggagtacaccaaaaacagggaagagtatgaggaggctcagaacgccattgtg
aaagagatcatcagcatcgctgctggctatgtggacccactgcagaccttgaatgatgtg
atcgcacaattagatgcagtggttagctttgcagttgtgtcccatgctgcccccgtgccc
tatgtgaggccgacgatactggagaaagggagtggcaggttaatcctgaagggtgcacgt
catccttgtgtggaagcccaggacgacgtggccttcattcccaatgatgtgaccttcact
aaaggaaaggagatgttccacatcattacaggaccaaacatgggtgggaaatctacctac
attcgtcaggtgggtgtgattgtgctgatggcacaggttggctgctttgtgccatgtgat
gaagcggaggtgagtgtggtggacagcctgctggcccgtgttggtgcaggggacagccag
attaaaggagtgtccacatttatggctgagatgcttgagacggcgtctattttacgttct
gccactgaggactctctgatcataattgatgaactgggaagagggacttccacatatgat
ggctttggcttggcttgggccatctctgagtacattgccacacgcctgaaatctttctgc
ctttttgccacacacttccacgagctgaccgctttagcacaacaagtgactactgtgaac
aacctccatgtcactgcactgaccacagacaacactctcaccatgctctacagggtgaaa
cccggtgtgtgtgaccagagctttgggattcacgtggctgagctggctaacttccccaag
catgtcattgcttatgctcgggaaaaggctttggagcttgaggagtttcaggatgtgtcc
agagaagatcaggatgccggacctgaagctaaaaagcgctgcttggagaaaaaagatggt
gagaagattattgaagatttcttgggaaaggtgaaggctctgcctgtccaggatatgacc
gatgaggctatcaaagcagagctgcgcaaactaaaggctgaggtggtcgtccacaataac
tcctttgttaatgacatagttgcacgtattgagaatgcaaaaactacattggcataa
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