Tachysurus vachellii: 132863590
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Entry
132863590 CDS
T09596
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132863590 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132863590 (mtrex)
03041 Spliceosome [BR:
tvc03041
]
132863590 (mtrex)
03009 Ribosome biogenesis [BR:
tvc03009
]
132863590 (mtrex)
03016 Transfer RNA biogenesis [BR:
tvc03016
]
132863590 (mtrex)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132863590 (mtrex)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132863590 (mtrex)
Spliceosome [BR:
tvc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132863590 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
132863590 (mtrex)
Ribosome biogenesis [BR:
tvc03009
]
Eukaryotic type
Pre-60S particles
Helicases
132863590 (mtrex)
Transfer RNA biogenesis [BR:
tvc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132863590 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
132863590
NCBI-ProteinID:
XP_060752463
LinkDB
All DBs
Position
20:17928406..17954439
Genome browser
AA seq
1041 aa
AA seq
DB search
MADAFGDDLFSVFDEEPTTSSKKTSSKTESRIGKTVGTHDRDKTESLTGDKTESLKTKRE
PENDGSDEVLCGKKARLEASEELNLGDLMPKVKVEQVETVEGCTHEVALPADQEYTQLKP
RVGKAAKDYPFILDPFQREAILCMDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHVV
YTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGASGGGGKWDP
KGRRGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVE
EVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFA
TETFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDE
KMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYKAVPGV
VEKMQKLEEMYNSIEIPNEDSVVTYYKIRQQLAKLAKDIEEYVHKPKYCLPFLQPGRLVK
VKKDDLDFGWGIVVNFSKKTNVKASTGDLDPLYVVEVLLHCSKDSVKNAATEAAKPAAQG
EKGEMQVVPVMLNLLTAISSVRLYIPKDLRPYDNRQSMLKSMQEVQKRFPDGLPLLDPID
DMGIKDSGLKKVIQKVEAFEHRMYTHPLHTDPNLGAVYTLCEKKAVVAGDIKAAKRELKK
ARTVLQMDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLT
AEQATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKISAEAKLDVDEDAYLNQ
FRPHLMDVVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN
KFALGITKIKRDIVFAASLYL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttattcagcgtttttgacgaggaaccgacgacttct
agtaagaagacgagctcaaagaccgagtctcggatcggaaaaactgttggcacacatgac
agagataagacagaatccctgactggagataagacagaatccctgaagacgaagcgagag
ccagagaacgatggcagtgatgaggtattgtgtggtaaaaaggccagactggaggcatca
gaggagctcaatcttggagacttgatgcctaaagtcaaagtggagcaggttgagacagtg
gagggctgcacacacgaggtggcgctgcctgcagatcaggaatacacacaactgaaacca
cgagtagggaaagcagccaaggattacccgttcattctcgacccttttcagcgcgaggcc
attctgtgcatggacaacaaccagtctgtcctcgtctccgctcacacctcagctgggaaa
acagtgtgtgcagagtatgccatcgctctggctctgcgggagaagcagcgagtgatcttc
accagccccatcaaagctctgagtaatcagaaatacagagagatgtacgaggagtttcag
gatgtgggactgatgactggagacgtgaccattaaccccactgcctcctgcctcgtcatg
accaccgagattttaaggagcatgctgtaccgggggtcagaggtcatgcgtgaagtggcc
tgggtcatatttgacgagatccattacatgagggactctgagcgtggtgtggtctgggag
gagaccatcatccttcttcctgataacgtccattacgtcttcctgtcagccaccattccc
aacgctcggcagttcgctgagtggatctgtcacctgcacacgcagccctgccacgtggtg
tacacagactacagacccactccactgcagcactacatctttccagcaggtggcgacggc
cttcacttggtcgtggacgagaacggggagttcagagaggataacttcaacacagccatg
caggttctccgggatgctggagactccggagcaagtggaggaggaggaaaatgggaccct
aaaggaagaagaggagggaccaagggtccatccaacgtgtttaagatagtaaagatgatc
atggagagaaatttccaacccgtcatcatcttcagcttcagtaagaaggaatgtgaggcg
tacgcgctacaggtgtccaaactcgacttcaatacagatgaagagaagaagctggtggag
gaggtgttcagcaacgccatcgactgtctgtcagatgaggataaaaagctgccgcaggtg
gagcacgttctgcctctgttgaagagaggaatcgggatacaccacggtggactgctcccc
atcctgaaagagaccattgagattctgttctctgagggactactgaaggccttgtttgca
acggagacgttcgctatgggcatcaacatgcctgctcgcaccgtgctcttcaccagcgct
cgcaagttcgacggcaaggacttccgctggatcacctcgggagagtacatccagatgtcg
ggccgagccgggaggagagggatggacgagagaggaatcgtcatctttatggtggatgag
aagatgagtccagctgtggggaagcagctcttaaagggatctgctgaccctctgaacagc
gccttccacctcacctataacatggtcctgaacttgctgcgtgtggaggagattaacccc
gagtacatgctggagaagtccttctaccagttccagcactacaaagctgtccctggtgta
gtggagaagatgcagaagctggaggagatgtacaacagcatcgagatccccaacgaggac
agcgtggtcacttactataaaatccgccagcagttagccaagctggccaaagatatagaa
gaatatgtgcataaacccaaatactgcctgccttttctacagcctggccgactggtcaag
gtgaaaaaggacgatttagattttggctggggcatcgtggttaacttctccaagaaaaca
aacgtcaaggccagtactggtgatctggatcctctgtatgtagtggaggttttattacac
tgcagtaaggacagtgtgaaaaatgcagctacagaggcagccaaacctgcagcacaggga
gagaaaggagagatgcaggtggtgccagtcatgctgaatctcctcactgctatcagctct
gtgcgactctacatccccaaagacctgcggccctacgacaaccgacagagcatgcttaaa
tccatgcaggaggtacagaaacgtttccccgatggtcttcctctgttagaccccattgac
gatatgggcatcaaagactccggactgaagaaagtcatacagaaggtggaggccttcgaa
cacaggatgtacacacaccctctccacactgaccccaacctcggggctgtctacacactg
tgtgagaagaaagcagtggttgccggtgatatcaaggcggcaaagcgggagctgaagaag
gctcgcacggtgctgcagatggatgagctgaagtgtcggaagcgcgtgctgcgccgcctc
gggttcgccacgtcctctgatgtcatcgaggtgaagggccgcgtcgcctgcgagatcagc
agtgcggacgagctgctcctgaccgagatggtgtttaacggcctctttaatgatctgact
gctgaacaggccacagctttactgagctgcttcgtcttccaggaaaatgctaacgagatg
cctaaacttacagagcagttagccggcccgctccgacagatgcaggaatgtgccaagcgc
atcgctaaaatctcagccgaggcaaagctggacgtggacgaggacgcctacctgaaccag
ttccgccctcacctcatggacgtagtgtacacgtgggccaacggagcctccttctcccag
atctgcaaaatgacggacgttttcgaaggcagcattattcgctgcatgaggcgcctggag
gagcttctgcggcagatgtgccaagcggccaaggccatcgggaacactgagctggagaac
aagttcgctctcggcatcacgaagatcaagcgtgacattgtgtttgctgccagtctttac
ctgtga
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integrated database retrieval system
