KEGG   Tachysurus vachellii: 132863884
Entry
132863884         CDS       T09596                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tvc  Tachysurus vachellii
Pathway
tvc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132863884 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tvc03041]
    132863884 (snrnp40)
Spliceosome [BR:tvc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    132863884 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    132863884 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_EIPR1 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Cytochrom_D1 WD40_like WD_LRWD1 Beta-prop_IFT140_2nd Beta-prop_Nup120_160 WDR54 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 132863884
NCBI-ProteinID: XP_060752923
LinkDB
Position
21:complement(7821082..7826411)
AA seq 345 aa
MIEAVKRGAEMALVPTGVKRPRTELVAAAQQLTTMGPPRSSSLQAPIMLLSGHEGEVYCC
KFHPNGSMLASAGFDRLILLWNVYGECENFATLKGHTGAVMELHYNTDGSLLFSASTDKT
VCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTFQN
TYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSSEGSYLLS
NSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYIW
DTTSRRILYKLPGHAGSVNEVAFHPEEPVVLSGSSDKRLYMGEIQ
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgattgaagctgtgaagcgcggagctgaaatggcgctcgttcccacgggggtgaagaga
ccgaggacggagctggtggcagcggcgcagcaactcactactatgggtcctccacgcagc
tccagtttgcaggctcctataatgttgttgtctgggcatgaaggagaagtctactgctgc
aagtttcatcctaatggctccatgctcgcttctgcaggatttgatcgcctgatcttgtta
tggaacgtgtatggagaatgtgaaaactttgccaccctaaagggccacaccggagctgta
atggagcttcattataacacagacggcagtctgctcttttcagccagtacggataagacc
gtttgtgtgtgggacagcgagacaggggagcgtgtgaagagactgaaaggccacacgtcc
ttcgtaaattcttgttttcctgcccgtcgtggaccacagctggcctgcactggcagcgat
gatggaactgtgaagctgtgggacatcaggaagaaggcatcagttcatacgttccagaac
acataccaggttttaagtgttaccttcaatgataccagtgaccagatcatctcaggaggc
atcgacaatgacatcaaggtatgggacctgagacagaataagctgatttacagcatgcag
ggacacggagactcagtgacggggctcagtctcagctctgagggatcctatttactgtcc
aactccatggacaacagtgtgcgcgtttgggatatccgtccatttgcccctaaggagaga
tgtgtgaagattttccagggaaatgtccacaattttgaaaagaatcttctacgctgctct
tggtcaccagatggcagtaagatagcggcaggctccgctgataggtttgtgtatatctgg
gacacgacctctcgtagaatcctttataagcttcctggccatgctggatcagtcaacgag
gtggccttccatccagaggaacccgttgttctatctggatccagtgataagcgcctctac
atgggggaaattcagtag

DBGET integrated database retrieval system