Tachysurus vachellii: 132864217
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Entry
132864217 CDS
T09596
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132864217 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132864217 (xab2)
03041 Spliceosome [BR:
tvc03041
]
132864217 (xab2)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132864217 (xab2)
Spliceosome [BR:
tvc03041
]
Complex B
Other components
Prp19-related factors
132864217 (xab2)
Complex C
132864217 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_19
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
TPR_MalT
TPR_1
PPR
NRDE-2
Tcf25
LTN1_E3_ligase_6th
N_NLPC_P60
Motif
Other DBs
NCBI-GeneID:
132864217
NCBI-ProteinID:
XP_060753515
LinkDB
All DBs
Position
21:complement(15147236..15160468)
Genome browser
AA seq
847 aa
AA seq
DB search
MPIFNGKQDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCITDPVYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLKFARKLPLPETAIRVYRRYLKLSPENAEEYID
YLHSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDLISKNPDKVTSLNVGAIIR
GGLTRFTDQLGRLWCSMADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQEDDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGIPRQIINTYTEAVQTVDAVKATGKPHSLWVSFARFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHTYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERSTQAVETEERHLMFNIYIKRAAEIYGVTHTRPIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSFCSQMCDPRMTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSTTVSDLAPGQSDIDDMKMLEQKAQQLAAEAEQDK
PKLKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEEDGDGDGEPDEVQLEQKSVPTAV
FGGLKDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcctatttttaacggaaagcaagacgttgtgtttgaggaagatgatttgccgtacgag
gaagaaatcatcaggaacccgtactcggtgaagtgctggatgcgctacatcgagcacaaa
caaaacgcacccaagtcggtgctgaatatgatttacgaacgagcgcttaaagagctaccg
ggcagttataaattgtggtacaattacctgagagagagaaggaagcagatcaaaggaaaa
tgcatcacagatccagtgtacgaggaggtcaacaactgccacgagagagcgctggtcttc
atgcacaagatgccgaggatttggctggattactgtcagttcatcgtgtctcagtgcaaa
atcacaagaagccggcgcacgtttgaccgagcgctcagagctctgcccatcacacagcac
ccacgcatctggcccctgtacctcaagtttgctcgaaagttacccctgcctgagaccgcc
atccgggtttatcgacgatatctcaagctttctccagagaatgcagaggagtacatcgat
tacctgcattctgtaggacggctggatgaggcagcggtgcggctggcagccgtagtcaac
gacgaagggtttgtctcaaaagaggggaagtcaaactaccagctctggcacgagctttgt
gaccttatctccaagaacccagacaaggtgacgtctctgaacgtcggcgccatcatccgt
ggtggtctcacgcgctttacagaccagctgggcaggctctggtgctccatggctgattac
tacatccgcagcggccatttcgagaaggcgcgtgacgtgtacgaagaggcgattcagact
gtcgtcactgtgcgagacttcactcaggtgttcgacagctacgcccagtttgaagagagc
atgatcgccgccaagatggagaccacgtccgagatgggacaagaagacgacgacgacatc
gatctggagttacgcttggctcggttcgagcagctgatcacacgccggccgcttttactg
aacagtgtgctgctgaggcagaacccacacaacgtccacgagtggcacaagagagtcaaa
ctctacgacggaattcctcgccagataataaacacctacaccgaagccgtgcagaccgtg
gacgccgtgaaagccacggggaagcctcactcactctgggtctcgttcgcccgcttctac
gaggaaaacgaacagctggatgatgccaggacgatcttcgagaaagccaccaaggtgaac
tacaagcaggtggacgacctggcggccgtgtggtgtgaatacggagagatggagttacgg
cacgagaactacgaccaggcgttacgtatactccggaaagccacggcgatcccggcgaga
aaagccgagtactttgattcgtcagaaccggtgcagaatcgagtgtataaatccctgaag
gtctggtccatgctggcagatttggaggagagcctcggcaccttccagtcaactaaatcc
gtgtatgatcgcattattgacctccgcatcgccacgcctcagatcatcatcaactacgcc
atgttcctcgaggaacacacttactttgaggaaagctttaaggcgtacgagcgcggcatc
gcgctgttcaggtggccgaacgtctacgatatctggaacacgtacctcaccaagttcatc
gatcgctacgggggcaagaagctggagagagcacgagacctgtttgagcaggctttggat
gggtgtccacccaaattcgccaaaaccatctacctgctctatgctaagctggaggaggag
tacggactggcccgccacgccatggccgtgtacgagagatcgacgcaggccgtggagacc
gaagagcgccacctcatgttcaacatctatatcaagagagctgccgagatctacggagtc
actcacaccagacccatctatcagaaagccatcgaggttctcccagacgagcatgccagg
gacatgtgtctacgcttcgctgacatggagagcaaactgggagagattgatcgtgcgaga
gctatttattccttctgctcccagatgtgcgatcccaggatgactgctaatttctggcag
acctggaaggagtttgagatccggcacgggaacgaagacacgatccgcgagatgctccgg
ataaagagaagcgtccaagcgacctacaacacacaggtcaactttatgtcctcacagatg
ctcaaagcaacaaccagcactacggtgtcagaccttgccccaggacagagtgacatcgat
gacatgaagatgttggagcagaaagcacagcagctggctgcagaggctgaacaggacaaa
cccaaacttaaagacaagatcctctttgtcaggagtgacacctctcgcagcgaactggct
gaactcgccaaacaggccaatccagacgagattgacattgacgatgacgaagaggacgga
gatggagatggagaaccagacgaagtacagctcgagcagaaaagcgtccctacagctgtg
ttcggaggactgaaggacgactga
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