Thalassomonas viridans: SG34_002040
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Entry
SG34_002040 CDS
T08831
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SG34_002040 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvd03021
]
SG34_002040 (rpoA)
03400 DNA repair and recombination proteins [BR:
tvd03400
]
SG34_002040 (rpoA)
Enzymes [BR:
tvd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SG34_002040 (rpoA)
Transcription machinery [BR:
tvd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SG34_002040 (rpoA)
DNA repair and recombination proteins [BR:
tvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SG34_002040 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WDE05739
UniProt:
A0AAE9Z490
LinkDB
All DBs
Position
428734..429723
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLRPRLVDVETISPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDIIEILLNLKGLAIGLEGKNEATLTLTKSGEGPVTAADIQHDGD
VTIANPEHVICHLTGDGSVSMRIKVEMGRGYVPASTRRNAEEEDRAIGRLLVDASYSPVE
RIAYDVESARVEQRTDLDKLVIDMETNGILDPEEAIRRASTILAEQLDAFVELRDVTEVE
QKEEKPLFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRAEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPESIADND
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaaccgaattccttagaccacgcctggtagatgtggagaccattagc
ccgactcgcgctaaggtcacattagagccattggaacgtggttttggtcacactttaggt
aatgcgttgcgccgcattcttttatcttcaatgccgggttgtgctgtaactgaagttgaa
atcgacggtgtattacacgaatacagtagtaaagaaggtgttcaagaagacatcatcgaa
atactgttaaaccttaaaggacttgctataggactagaaggcaaaaacgaagccactctt
accttaactaagtctggtgaaggccctgtaacggcagctgatatccagcatgacggtgat
gtgactatcgctaaccctgagcacgtgatctgtcacctgacaggcgacggttctgttagc
atgcgcatcaaggtagagatggggcgtggttacgtaccggcttctacccgtcgtaatgcc
gaggaagaagatcgagcaatcggacgtttgctggttgatgcttcatacagtcctgttgaa
agaattgcctatgatgttgagtctgcacgtgttgaacaacgtacagatttagacaaactg
gttatcgacatggaaaccaacggtatcctagatccggaagaagcgatccgtcgcgcctca
accatcctggccgaacagctggatgccttcgttgagttacgtgatgtgaccgaagtggag
caaaaagaggagaaacctctgtttgacccaatcttacttcgtccagtcgatgatttggaa
cttactgttcgttcagcaaactgtctgaaagcagaagcaattcaatatatcggtgattta
gtacagcgtgctgaggttgaacttctgaaaacacctaacttaggtaagaagtcattaacc
gaaatcaaggacgtattagcgtctcgcggtctgtctctgggcatgcgcctggaaaactgg
ccgcctgaaagcatcgctgataacgactaa
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