Thalassomonas viridans: SG34_002965
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Entry
SG34_002965 CDS
T08831
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG34_002965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvd03019
]
SG34_002965
03400 DNA repair and recombination proteins [BR:
tvd03400
]
SG34_002965
Enzymes [BR:
tvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SG34_002965
Messenger RNA biogenesis [BR:
tvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG34_002965
DNA repair and recombination proteins [BR:
tvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SG34_002965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WDE05909
UniProt:
A0AAF0CAI7
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All DBs
Position
659169..661100
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AA seq
643 aa
AA seq
DB search
MTTDINQLLQTHFGYQTFRPGQAEVIRTIVSGRSAAAIFPTGAGKSLCYQLPALCLPHVT
LVVSPLLALMKDQLEFLQAKGIAAASIDSAQSKAQALEVMNRVRSGDIKILMISVERLNN
ERFRQFIAGIRLSLLVVDEAHCISEWGHNFRPDYLKLPVYMKELAIPQVLLLTATATTAV
IRDMGNKLGVRPEDVTLTGFYRPNLDLAVMGVSQDEKLTALTSWLEDKYQLSGIVYVTLQ
QSAELLAGQLKQKGIAAQAYHAGMSAEDRQQIQQEFMSGDTRLIIATIAFGMGIDKSDIR
YVVHYDLPKSIENYAQEIGRAGRDGLLSHCLVLANADNLNVLENFVYGDTPEQDAIGYVL
DEIRQQQGEWQLVLNALSNDANIRLLSLKTLLVYLELFGVIKPAYSYFAEYKFKLTGGSE
QQLAATFNGERADFIRALLHSCDKARTWYTVNFDRLQQIYPSDRQRVLTALEYLDGQGLI
ELQAKTMTQVYQVLNTSYSMEQLQRELAEKFADKEQNEIQRIHQLLAFFAGDSCLSRRLG
QYFADEQLKQNCGHCSVCRGQVALLPETRSLAPLESFDFAELSGEIREKLAHQASSVLIS
RFLCGLTTPVFTRLRVRKLKGFARLEQYRFARVKAWVEAHMPE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgatattaatcaactcctgcaaactcactttgggtaccaaacattccggccg
ggccaggcggaggttatccggaccatcgtttccgggcgcagcgctgccgccatttttccc
actggcgccggcaagtccctgtgttaccagctgccggccttatgtttgccccatgtaacc
ttagtggtttctcccttgctggcgttaatgaaagatcagctggagtttttacaggctaaa
ggcatagcggcggcaagtatagattcggcccagtcgaaagcacaagcccttgaggtgatg
aaccgggtgcgcagcggcgacattaaaatcttgatgatctccgttgaacgcctcaacaat
gaaaggtttcgtcagtttattgccggtatcaggctatccttgctggtggtggacgaagcc
cactgcatttccgaatgggggcataatttcagaccggattatctgaaattgccggtttat
atgaaagagctggctatcccgcaggtgctgttgctgacggccaccgccaccacggcggtg
atccgggatatgggcaataaacttggcgtgcggcctgaggatgtcaccttaaccggtttt
taccgccctaacctggatttggcggtgatgggggtcagccaggatgaaaaactcaccgcc
ttaacctcctggctcgaagacaagtaccaactcagcggtattgtttatgtcaccctgcag
caaagcgccgagttgctggccgggcaattaaaacaaaaaggcattgccgcacaggcctat
catgcgggcatgtcggccgaagatcgccagcagatccagcaagagtttatgtccggtgat
accaggctgatcatcgccaccatcgcctttggcatgggcatagataaaagtgatatccgc
tatgtggtgcattatgacctgcctaaatcgatagaaaactacgcccaggaaatcggccgg
gcggggcgcgacggcctgctttcccattgcctggtgttggccaatgccgataacctgaat
gtgttggagaattttgtttacggcgataccccggagcaggatgccataggttatgtgctg
gatgagatccggcaacagcagggggaatggcaactggtattaaacgctttatccaacgac
gccaatatcaggttgctaagcctgaaaaccttactggtgtacctggaactttttggcgtg
atcaagccggcttacagctattttgccgaatacaaatttaagcttaccgggggctccgag
cagcagttagccgcaacctttaacggcgagcgtgccgattttatccgcgccctgctgcac
tcctgcgataaggccagaacctggtatacggtgaactttgaccggctgcagcaaatctat
cccagcgaccggcaaagggtattgacggcgcttgaatatcttgacggccagggactgatc
gaattacaggcgaaaaccatgacccaggtctaccaggtattaaatacttcatattcaatg
gagcaactgcaaagggagctggcggaaaagtttgctgataaggagcaaaatgaaattcaa
cgcattcaccagttgctggcgttttttgccggggatagctgtttgagccggcgtctgggg
cagtattttgccgatgagcagcttaagcagaactgcggccattgcagcgtttgccggggg
caggtggcgctcttgcctgagacccgttcgctggcaccgctggaaagctttgactttgcc
gaacttagcggcgagatcagggagaaactggcgcatcaggcgagcagtgttttgatcagc
cgttttctttgcggcctgacgacacctgtatttacccggctcagggtcaggaaactgaaa
ggttttgcccggcttgagcaataccgttttgcccgggtcaaagcctgggttgaagcgcat
atgccggaataa
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