Thalassomonas viridans: SG34_004465
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Entry
SG34_004465 CDS
T08831
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tvd
Thalassomonas viridans
Pathway
tvd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SG34_004465 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvd03021
]
SG34_004465 (rpoD)
Transcription machinery [BR:
tvd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SG34_004465 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
TMPIT
Motif
Other DBs
NCBI-ProteinID:
WDE06190
UniProt:
A0AAE9Z3Y6
LinkDB
All DBs
Position
complement(1053980..1055833)
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AA seq
617 aa
AA seq
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MVQAPQSRLKELITKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIIRMINDMGIQVFENAP
DTDTLMMSEANTDEDAAEAAAAALATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIA
KRIEEGIKEVQHSVAEYPPAINFLLEQWDNYVAEEIRLSDIVVGFLDPDAQDDDIAAAAT
HIGSELSDEDLKDEDADLDDDDESESDDDDEESGPDPEVAKEKFAALREAYEHANKVIDE
KGRGHVDSQAAIDGIADVFKEFRLIPKVFDRLVKNMRSVMDRLRVQERLIMKHCVVGAGM
PKATFIKIFPGNETSKDWFIEQMNAGEPYSAKLKNVEQDVERCIYKLSMLEQETYLNVHG
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGRE
PTPEELAERMIMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATS
ENLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEQLKSFLDGE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggttcaagccccacaatccagacttaaagagttaataaccaaaggtaaagagcaagga
tacttgacctttgccgaggttaacgatcatcttcctcaggatattatcgattccgatcag
gttgaagacatcattcgaatgatcaacgacatgggtattcaggtgtttgaaaacgcaccg
gatacggatacgttgatgatgagtgaagccaataccgacgaagatgctgcagaagctgcc
gcagcggcgctggcaaccgtagaaagcgaaatcggccgcacaaccgacccggtacgtatg
tacatgcgtgaaatgggtaccgttgagctgttgacccgcaagggtgaaatcgtgatcgcc
aagcgcatcgaagaaggtattaaagaagtgcaacacagcgttgccgaatacccgccggcc
atcaatttcctgttggagcaatgggataactatgttgccgaagaaatccgcttaagcgac
atagtcgtcggtttcctcgaccccgatgcccaggacgacgacattgccgcagccgccacc
catatcggctctgagctgtcagatgaagatctcaaagatgaagacgccgacctcgacgat
gacgacgagagtgaaagcgacgacgatgacgaagaaagcggcccggatccggaagtcgcc
aaagagaagttcgccgccttgcgcgaagcctacgagcacgccaataaggttatcgacgaa
aaaggccgcggccacgtagattcacaggccgccattgacggtatcgccgatgtcttcaaa
gaattccgccttatcccgaaagtgtttgaccgcctggtgaaaaacatgcgcagcgtgatg
gaccgtttacgtgttcaggagcgtttgatcatgaaacactgcgtggttggcgccggtatg
ccaaaggcaacctttatcaagatattcccgggtaacgaaacctcaaaagactggtttatc
gagcagatgaatgccggcgaaccttattctgccaagctgaaaaatgtcgagcaggacgtc
gagcgttgtatatacaagctcagcatgcttgagcaggaaacttacctgaacgtacacggc
attaaagacatcaaccgccgcatgtctatcggtgaagcgaaagcccgccgtgcgaaaaaa
gaaatggtggaagccaacttacgtctggttatctccattgccaagaaatacaccaaccgt
ggtttgcagttcctggatctgatccaggaaggtaatatcggtctgatgaaagcggtagac
aaattcgaataccgccgcggttacaagttctcgacttatgctacctggtggatccgtcag
gcgatcacccgctcgattgccgaccaggccagaaccatacgtattccggtgcatatgatc
gaaaccatcaacaagcttaaccgcgtttcccgtcagatgctgcaggaaatgggccgcgag
ccgaccccggaagagctggcagagcgcatgatcatgccggaagacaagatccgtaaggta
ctgaaaatcgccaaagagccgatttccatggaaaccccgatcggtgatgatgaagattcg
cacttaggtgactttattgaagacggcagcggtgaattaccggttgattctgccacttca
gaaaacctgaaaaatgccacccacgaagtgctggccggcctgaccgcccgtgaagccaaa
gtattgagaatgcgtttcggtatcgacatgaataccgaccacactctggaagaagtaggt
aaacagtttgacgttacccgtgagcgtatccgtcagattgaagcgaaagccctgcgtaaa
cttcgccatccgtcccgttcagagcagctgaaaagcttcttagacggcgagtaa
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