Thalassomonas viridans: SG34_013125
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Entry
SG34_013125 CDS
T08831
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SG34_013125 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvd03400
]
SG34_013125 (recB)
Enzymes [BR:
tvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SG34_013125 (recB)
DNA repair and recombination proteins [BR:
tvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SG34_013125 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
SH3BP5
Motif
Other DBs
NCBI-ProteinID:
WDE07751
UniProt:
A0AAE9Z6P1
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All DBs
Position
2957210..2960893
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AA seq
1227 aa
AA seq
DB search
MTFAANNLVAHEIPLTGKHLIEASAGTGKTFNITRLYLRLLLEQKLPVEQILVMTFTKDA
TEELRGRIGAFIRSAINDWHRLVDSDPYFAALAEKVTADEAGFLLKKALLFLDEAAIFTI
HGFCKRVLSQHAFASGMAFNSQMEASDQELLLEACQDWYRVLAQQSPQQFELLAAFWGDP
QTFLSHFSKAVRQVVLCGELETVSAANIRQGFLAKVQQALYALEHHDEMLSLALIEVKTG
QEQQKRRQELSALKAWLAAMLEDIETFKEKMPDAFIDGRRFSRSKHKQQLVDIFTPVNEV
KAAVKSLQQNLDKAQAYVVVKQGLDYISEQLAGKKQQQNMLSFDDLISRLKHCLTDDGNP
QLAQVLFAQFPVALVDEFQDTDPLQFAILKAIYFQQPDTALFMIGDPKQAIYGFRGGDVF
TYLSARNLCDYQWLMDTNWRSSPEMIRGYNRLFYGNHLEGKPVAVFGYGIPYVPVKASPA
AAEKSLPGPGQHALEFVHFTASDENGEQQEKKKAPVRAKVKQDFRPVMAGWCAGEIARLL
AGGEENTLAARDIAILVRDGSEAAAIKQALQELGLASVFLSNKANLLHSEQTEQFLCLLK
GVLYVENERLYTAALACGLLGFTPAKLYRLQRDELGWQELKFRFLALRQEWQHKGFITMA
LKLMHEHFVIRGEEQDRALTNLLHLFEILQSASQRHRQPQELLYYLEQEILKDNPESETE
LRLESDANLIKIVTQHGSKGLEYPVVFIPFATRHKDPLRFGNRNIALVEYHDSSGRQKLS
LDGSSEARQAMADEAYAESIRLLYVAVTRAEQRCYILTAEFEQYFNSPLGKTLKWQKEQD
ILASLHQLADEHPGVIGVKEICEPVAPEPRAGQSDTAMELTPAAFHGKIERDWWLSSFSA
LSRNLRHGGVSTPDRDGETGVSIPTSAELLDSTLLRFNLAKGAHTGNLLHDIFEHLDFSR
PNWQESMKWPLVKYGELTPGYSEQDLTAWLKQVLMTPLLQSDGTEAAEGTVNWCLADIPV
EQTLRESEFYFPMSRTRVAELARLLTRHRQLSHRCLSAPGQQHGQLSAAKNVSLPAYQQL
KGMMHGFIDLVFEYQGKYYLSDYKSSHLGNGFHAYKPAALLANIQDNYYDLQYLIYALAL
HRHLAYALEDYDPGQHFGGIYYFYLRGMTDDAKHAGCGVYYRHIDLQELTALDAIFAGEH
YQDKGQDKGQEKDQDHDKNEGEQEYAS
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgccgcaaacaacctggtggcccatgaaattcccctgacgggcaagcacctg
atagaggccagtgccggtacggggaaaacatttaacatcacccgcttatatttgcgcctc
ttgctggagcaaaagttgccggttgagcagatcctggtgatgacctttaccaaggatgcc
accgaagaattacgcgggcgtatcggcgcttttatccgcagtgccattaatgactggcat
cgattggtggactcagatccctattttgccgctttggcggagaaggtaactgccgatgaa
gccggatttttactgaaaaaagccctgttattcctcgatgaagcggcgatttttaccata
catggcttttgcaagcgggtgctgagccagcatgcctttgccagcggcatggcttttaac
agccagatggaggccagcgatcaggagctgctgcttgaagcctgccaggactggtaccgg
gtgctggcccagcaaagcccgcagcagttcgagttgcttgccgctttttggggggatccg
cagactttcctcagccacttttccaaggccgtccgtcaggtggtgctctgtggcgagctg
gaaaccgtcagtgcagccaatatacgtcagggctttctggctaaggtgcaacaggctctg
tatgccctggagcaccatgacgaaatgctcagtctggcgttgatcgaggtaaaaaccggc
caagagcagcaaaagcgccgccaggaactgtcggcgttgaaggcgtggctggcggcaatg
cttgaggatatcgaaacctttaaggagaaaatgccggatgcctttatcgacggccgccgt
ttttcccgcagcaaacataagcagcaactggtggacatttttaccccggtaaacgaggtg
aaagccgcggtgaaaagcctgcagcaaaacctggacaaggcgcaggcttatgtcgtggtg
aaacagggactcgattatatcagcgagcagctggcgggtaaaaaacagcagcagaacatg
ctcagttttgatgaccttatcagccgcttaaagcactgcttaacggacgacggcaaccct
cagttggcgcaggtgttgtttgcacagtttcccgtggccctggtggatgagttccaggat
acggatccgctgcaatttgcgattttaaaagccatctattttcagcagccggataccgcc
ttatttatgatcggcgatccgaaacaggccatttacggttttcgcggcggcgatgttttt
acctatttgtcggcccgcaacctgtgtgactaccagtggctgatggataccaactggcgc
tccagcccggaaatgatccggggttataaccgcctgttttacggcaatcatcttgaaggg
aagccggtagccgtttttggttacggtattccctatgtgccggtaaaagcttcgcctgcg
gcggcggaaaagtccctgccagggcccgggcagcacgcgctggagtttgtccattttacc
gcttccgatgaaaacggcgagcaacaggagaagaaaaaagcccccgtcagggctaaagtg
aagcaagatttccggcctgtgatggccggctggtgcgccggtgaaatcgcccgtttgctt
gccggtggagaagaaaacacattggcggcccgggacattgccatcctggtgcgtgacggc
agtgaggcggcggccatcaaacaggcgctgcaggagctgggactggcttcggtattttta
agcaacaaggctaatctgctgcacagcgaacaaacggagcagtttttgtgcctgcttaaa
ggggtgttgtatgtggaaaatgaacgcctttataccgcggcacttgcctgcggcctgtta
ggctttacgccggcgaaactttaccgtttgcagcgggatgagctgggctggcaggagttg
aagttccggtttttggccttacggcaggagtggcaacataagggctttatcactatggcc
ctgaaactgatgcacgaacattttgttatccggggggaagagcaggacagggcgctgacc
aatttgctgcatttgtttgaaattttgcagtctgccagccagcgtcatcgccagccccag
gaattgctttattacctggagcaggagatcttaaaggacaatcccgagtcggaaacggaa
ttaaggctggaaagtgatgccaacctgatcaaaatcgtcacccaacatggctcgaaaggg
ctggaatatcccgtggtctttattccctttgccacccggcataaagatccgttgcgtttt
ggcaaccgcaatatcgccctggttgaatatcatgacagcagcggacggcagaaactgagt
ttagacggctcgtctgaggcccggcaagccatggccgacgaggcttatgccgagtccata
cgcctgttatatgttgccgtgacccgggcggagcagcgctgttatattttaaccgccgaa
tttgagcaatatttcaattctccgctgggcaagacattaaagtggcaaaaagagcaggac
atccttgccagcctgcatcagcttgccgatgaacatcccggggtgatcggggtcaaagag
atctgtgagccggtcgcaccggaaccccgggcggggcaaagtgataccgccatggagtta
acgccggcggcttttcacggcaagatcgaaagggactggtggctgagctctttttccgcc
ttaagccgcaacttgcgccacggcggggtttcgacaccggacagggacggtgaaaccggt
gtttcgataccgacctctgccgagctgcttgacagtacactgctgcgctttaacctggcc
aaaggggcgcataccggtaacctgttacacgatattttcgaacatctggactttagccgg
ccgaactggcaggagtcgatgaaatggcccctggtgaaatacggcgagctaacgccgggt
tatagcgagcaggacttaaccgcctggctgaagcaggtattaatgacgcctttgttgcaa
tctgatggcacagaagcggctgaagggacggtaaactggtgcctggctgatattcctgtc
gagcagaccttaagggaaagcgagttttattttcccatgtcccgtacccgtgtcgccgaa
ttagcgcgactattgacgcggcatcgccagctcagtcaccgctgtctttcagcgccagga
caacagcatgggcaactgtcggcagcaaaaaacgtcagtttacccgcttaccagcagtta
aaaggcatgatgcatggttttatcgatcttgtttttgaatatcagggaaaatattacctt
agcgactataaatccagccacttgggcaacgggtttcatgcctataaaccggcggccctg
ctggccaatatccaggacaattattacgatctgcaatacctgatttatgccctggccctg
caccggcacctggcttatgctctggaagattatgatcccgggcagcattttggcggcatt
tattatttctacttgcgcggcatgacagatgatgccaaacatgcgggctgcggcgtgtat
taccgccatatcgacctgcaggagctaaccgctttggatgccatttttgccggcgagcat
taccaggataagggccaggataagggccaggagaaagatcaggatcacgataaaaacgag
ggggagcaggaatatgccagctaa
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