Thalassomonas viridans: SG34_013175
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Entry
SG34_013175 CDS
T08831
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tvd
Thalassomonas viridans
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvd03019
]
SG34_013175 (hrpA)
Enzymes [BR:
tvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SG34_013175 (hrpA)
Messenger RNA biogenesis [BR:
tvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SG34_013175 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
nSTAND3
UvrD-helicase
NACHT
SLFN-g3_helicase
TsaE
ABC_tran
AAA_30
PhoH
SRP54
T2SSE
AAA_23
NTPase_1
HA2_N
Motif
Other DBs
NCBI-ProteinID:
WDE08239
UniProt:
A0AAE9Z901
LinkDB
All DBs
Position
2971546..2975415
Genome browser
AA seq
1289 aa
AA seq
DB search
MPSLFKLLDQVALADKARLKKRLFGLKKIAKEEKRAKVQQQIADAIERSIKLKQQKLDHK
PGISYPPALPVSQNVAQIAKAITENQVVIIAGETGSGKTTQIPKICLELGRGIEGLIGHT
QPRRIAARTVANRIAEEMNTKLGEQVGYKVRFNDQVSEQSYIKLMTDGILLAEMQTDRLL
RQYDTLIIDEAHERSLNIDFILGYLKQILPKRPDLKVIITSATIDPERFSRHFDNAPIIE
VSGRTYPVEMLYRPLAEQEDVDIISGILQAVDELTAIGQGDILVFLNGEREIRDTASALE
KAQLPHTQILPLYARLTVQEQNRIFRPHSGRNIVLATNVAETSLTVPGIKYVIDPGTARI
SRYSYRTKVQRLPIEPISQASANQRAGRCGRVSSGVCIRLYSEEDFLSRPEFTDPEILRT
NLATVILQMLALDLGDISEFPFVQPPDNRNINDGIRLLEELDAISGAKGKHGLTKNGRLL
SKFPIDPRLSKMVLSAIDLGCIEQVFAIVSALSIQDPRERPHEKQQAADEKHARFKDKSS
DFVSLLNLWQYVNEQQKALTNNQFRRLCQKEYLSYIRIREWQDINAQLRQTLREQNIAMS
SVDAGDENQLALVHQALLSGLLSHIGQQDENREFKGARGSKFFVFPGSALAKKPPKWLMA
SELVETSRLFARTVARIDPLWLEPMASHLVKRSYSEPHWEKKQGAVMAYEQVSLYGLIIV
PKRKVNFNQIEPETCREIFIREALVNYDIQLKEAFFKHNRELVASIEAMEQKARRKDFLI
EEQHLVDFYEQKLPDNVICQRSFLSWWKKAKKTDDKLLHFTREFLLNESSNELSSRDYPD
SWQQDNLILPLSYHFSPGDIDDGISVMIPVGILNQVQQEGFDWLIPALRLELIVALIKGL
PKTLRRNFVPAPNYAEACMAAIDEGDGPLTAAVAKQLLRMTGVRLPEDCWDAIELPAHLT
MNFKVLDEKNKLIRQGRDLHELKARLQGKVKATIKQVADKGIEQKDLKEWDFGELPVGYQ
RKVANMTIKAFPALVDHQSSVAIELFEQETQAQQAMLAGVSRLILLNIPSPVKYLQEKLP
NKAKLGLYFNPFGAIGDLLQDCINAACSYLVAQQGDLPRDEAEFKLRRDFVRAEIADCVL
QAAIKVEKALSLGHDIRKMLKGKVALNVIQSHGDIKDQLDKLIFKGFVTASGIDKLDDII
RYLSGILRRLEKLPVDPNQDRLKMLEVEKVTQLWQTLVGKQRKDQPLLQEIADIKWMIEE
FRVSLFAQNLGTAYPVSGKRIVNYLKEFD
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atcccgtcattatttaaattattagatcaggtggccttagcggataaggcgcgtttgaaa
aaacgtttgtttggtttaaaaaaaatcgccaaggaagaaaaacgcgcaaaagtccagcag
cagattgccgatgccattgagcgttccatcaagctcaaacaacagaaactcgaccataaa
cccgggatcagttatccgccggcattacctgtctcgcaaaacgttgcccaaattgccaaa
gccatcacagaaaaccaggtggtgatcattgccggtgaaaccggctcgggtaaaaccacc
caaatcccgaaaatatgcctggagctgggacggggcatcgaaggcctgattggccatacc
cagccaagaaggatagcggcgcgtaccgttgccaaccgaattgccgaggaaatgaacact
aaactcggtgagcaggtaggttataaggtcaggtttaatgatcaggtcagcgaacagagc
tatatcaaactgatgacagacggtatcttgctggcagagatgcagacagaccgcctgttg
cgccagtacgataccctgatcatagacgaggcccatgaaagaagcctgaatatcgatttt
atccttggctacctcaagcagatattgccgaaacgtcccgacttaaaggtgatcatcacc
tcggccaccatagatcccgagcgtttctcccgccactttgacaatgcccccattattgaa
gtttcggggcgtacctacccggtggaaatgttataccggccattggcggagcaggaagat
gtcgatatcatctccggcattttgcaggcggtggacgagcttaccgccataggccaggga
gatatcctggtgttcctgaacggcgagcgggaaattcgcgataccgccagcgccctggag
aaggcgcagctgccccatacccagatcttgcctctgtatgccaggctgacggtgcaggag
caaaaccgtattttccgcccccacagcggccgcaatatcgtgctggccactaacgttgcc
gaaaccagtttaaccgtgccgggcattaaatacgtgatagatcccggtacggcgcgcatt
tcccgctacagttaccgcactaaggtacaaaggctgccgatagagccgatttcccaggcc
agcgccaaccagagggcagggcgttgtggccgggtctcttccggggtttgtatccgtctt
tattccgaagaagacttcctttcccgcccggaatttaccgatccggaaattttgcgtacc
aacctggccacggttatcttgcagatgctggcattggatctcggggatatcagcgagttt
ccttttgtccagccgccggataaccgcaatatcaatgacggtatccgcttgctggaagag
ctggatgccatcagcggcgctaagggcaagcacggcctgacgaaaaatggccgtctgctg
tccaagttcccgatagatccccggctgtcaaaaatggtcctcagcgccattgaccttggc
tgtatcgagcaggtttttgccattgtcagtgccctgagtattcaggacccgcgcgagcgt
ccccatgaaaaacagcaggcggcggatgaaaaacatgcccgtttcaaggataaaagctcg
gactttgtttccctgctgaacctgtggcaatacgtcaacgaacagcaaaaagcgttaacc
aataaccagttcaggcgtttatgccagaaagagtatttaagctatatccgtatccgggaa
tggcaggacattaatgcccagctaaggcagaccctgagagagcaaaatattgccatgagc
tcggtagacgccggggatgaaaaccagctggccttagtgcaccaggcgctattgtccggc
ctgctcagccatatcggccagcaggatgaaaaccgcgaatttaagggcgccaggggcagc
aagttttttgttttccccggctcggcactggcgaaaaagccgcccaaatggctgatggct
tccgagctggtggaaaccagccgtttgtttgcccgcacggtggcgcgtatcgatcccctg
tggctggagccgatggcgtcccacctggtcaaacgcagctacagcgaaccccattgggag
aaaaagcagggggcggtgatggcgtatgagcaggtctccctttatgggctgatcatagtg
cctaaacgtaaggtgaattttaaccagatagagcctgaaacctgccgcgaaatttttatc
cgcgaagccctggtcaattacgatatccaattaaaggaagctttctttaagcataaccgc
gagctggtggccagtatcgaagccatggaacaaaaggcgcgccgtaaagatttcctgatc
gaagagcagcacctggtggacttttatgagcaaaagctgccggataacgtcatttgccag
cgcagctttttaagctggtggaaaaaggccaaaaagaccgacgacaagttattgcacttt
acccgggaatttttgcttaacgagagttcgaatgagctatccagccgggattatccggat
agctggcaacaggataacctgatcttgccgctgagttatcattttagccccggcgacatc
gatgacggtatcagcgtgatgatccccgtcggtatcttaaaccaggtacagcaggaaggt
tttgactggctgatcccggcgctcaggctggaacttattgtcgccttaatcaaaggcttg
ccgaaaaccttgcgccgaaactttgtcccggcgcctaactatgccgaagcctgcatggcg
gccatagatgaaggcgacgggccgttaaccgctgcggtggcgaaacagctgctgcgcatg
acaggggtgaggttgccggaagattgctgggacgccattgaattgcccgcgcatttgacc
atgaactttaaagttctggatgagaaaaataagctgatccgtcagggtcgggatcttcat
gaactcaaagcccggctgcaggggaaagtgaaagccaccatcaagcaggtggcggataaa
ggcatagaacagaaggatttaaaggagtgggattttggtgagctgcctgtaggctatcag
cgcaaggtggccaatatgaccatcaaagcctttcctgccctggtggatcatcaatccagc
gtagccatcgaactgtttgagcaagaaacgcaggcgcagcaggcgatgcttgccggtgtc
agccgcctgattttattgaatatcccttcaccggtaaaatacctgcaggaaaagctgccc
aataaagccaagctggggctgtactttaacccttttggtgctatcggtgatttattgcag
gattgtatcaatgccgcctgtagctacctggtggcgcagcagggagatttgcccagagac
gaggcggagtttaagctcagacgggactttgtccgcgctgaaattgccgactgcgtgctg
caggcggcgatcaaggtggaaaaggcgttaagcctgggccacgacatacgtaaaatgctt
aaaggtaaggtggcgctgaatgtcatccaatcccacggcgatatcaaagatcagctggat
aagcttatttttaaaggttttgtcaccgcttccggcatagacaagctcgatgatattatc
cgctacctcagcggtatcctcaggcgtctcgaaaaactgccggtagatcccaaccaggac
aggttgaaaatgctggaggtggagaaggtaacccagctgtggcaaacgcttgtcggcaaa
caaagaaaagatcagccgctgttgcaggagattgccgatatcaagtggatgatagaggaa
tttcgggtgtcgttatttgcccagaacctgggcacggcgtatccggtttccggcaaacgc
attgttaattacctgaaagagtttgattaa
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