Thalassomonas viridans: SG34_016120
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Entry
SG34_016120 CDS
T08831
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
tvd
Thalassomonas viridans
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tvd01011
]
SG34_016120
Enzymes [BR:
tvd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
SG34_016120
Peptidoglycan biosynthesis and degradation proteins [BR:
tvd01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
SG34_016120
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM3_NFP
DUF3071
LTD
Motif
Other DBs
NCBI-ProteinID:
WDE02967
UniProt:
A0AAF0C556
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Position
3645723..3647354
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AA seq
543 aa
AA seq
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MKYLLLSLPASLLLLGCQNTPFSPEQELPEAVNTELAANIASPVEISQALLADEAVDVIH
PVADVDITLSENDTHVSDDIWQRIRDKLTFEVPENRRVVAQRNWYAKHPKYLDRVAKRAE
PFIFYILQELEANDMPMEIALLPIVESAFDPFAYSHGRASGMWQFVPGTGTRFGMKQNWW
YDGRRDVVASTKGAISYLKYLHKYFDGDWLLALAAYNSGEGRVKRAVKNNARKNKKTDFW
SLDLPKETRAYVPKLLALADLVKRPENFNIKLYEIENKAVISQVDIGSQLDLAKAASLAG
LTLAELQRLNPGFNRWATDPDGPHYLLLPKHKEPDFTAGLNKLSEQDRLAWQRYKIRSGD
SLIKIAKKFHTTPALIKQVNNVKGSRIRAGKHLLIPVAATSLDHYILSQDQRLASTQNKK
QAGVKTIHTVRSGDTLWDISQSYKVTSRNIAKWNGIAPRDTIKPGQQLVIWQNAKTASAK
SPAEQAIMRNITYKVRRGDSFARIADKFNVTIKDIERWNSLSRKKYLQPGQILKLSVDVT
NNI
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatttattactctcactccccgcttccttattgctgcttggctgtcaaaatacg
ccattttccccagagcaggagctcccggaagccgtcaataccgaattagccgccaatatc
gccagcccggtggaaatcagccaggcattgctggcggatgaagccgtggatgttatccat
ccggtggcggatgtcgacattaccctgtctgaaaatgacacccatgtttcagacgatatc
tggcagcgtatccgggacaaactcacttttgaagtgccggaaaacagacgtgtcgtcgcc
cagcgcaactggtatgccaaacaccccaagtatctcgaccgggtagccaaacgtgccgaa
ccttttatcttctatattctgcaggaattggaagctaacgatatgccgatggaaatcgcg
ctgctgccgatagttgaaagcgcctttgatcccttcgcctattcccacggccgggcatcg
ggcatgtggcagtttgtccccggcaccggcacccgtttcggcatgaagcagaactggtgg
tatgacggacgccgcgacgtggttgcctccaccaaaggcgccatcagctacctgaaatac
ctgcataagtactttgacggcgactggctgctggccctggccgcctataattccggtgaa
ggccgggtaaaacgcgcggtgaaaaataatgctcgcaagaacaaaaaaaccgatttctgg
tcgctggatttaccgaaggaaacccgtgcttatgtgcctaaattactggcactggctgat
ctggtaaaacggccggaaaattttaatatcaaactttacgaaattgagaacaaggcggtg
atctcccaggtagatatcggctcccagctggatctggcaaaagccgccagcctggccggc
ttaaccctggcagagctgcagcgcctgaacccgggctttaaccgctgggcaacggatccg
gacggcccccactacctgttattgcctaagcataaagagccggactttaccgccggctta
aacaagctcagcgagcaggacaggctggcctggcaacgctataagattagatccggcgac
agcctgatcaaaatagcgaaaaagttccataccacgccggcattaatcaagcaggtcaat
aatgtcaaaggcagccgcatccgcgccggcaagcacctgctgatccctgttgccgccacc
tctctggaccactatatcttatcccaggatcagcgcctggccagcacccagaacaaaaaa
caggcgggagttaaaaccatacataccgtcagatccggcgatactctgtgggatatcagc
caaagctataaggtaaccagccgcaatatcgccaaatggaacggcatagcgccgcgcgat
accataaagcccggccagcaactggtgatctggcaaaatgccaaaaccgccagcgccaaa
agcccggcagagcaggcgattatgcgcaacattacctataaggtacgccgcggcgattct
tttgcccgtattgccgataaatttaatgtgaccatcaaggacattgagcgctggaacagc
ctcagccgcaaaaaatacctgcagccgggacaaattttaaaactctcggtagatgtgacc
aacaacatctag
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