Thalassomonas viridans: SG34_017340
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Entry
SG34_017340 CDS
T08831
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SG34_017340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvd03400
]
SG34_017340 (mfd)
Enzymes [BR:
tvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SG34_017340 (mfd)
DNA repair and recombination proteins [BR:
tvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SG34_017340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDE03172
UniProt:
A0AAE9YZ02
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All DBs
Position
3912192..3915713
Genome browser
AA seq
1173 aa
AA seq
DB search
MSQTSNIFEPVIAKRRGDLADKKVWSNLVGSSSALAIYHGAKNADAPVLLVTYDTPSALR
LEQELLSLNTDQRLAVCLFPDWETLPYDSFSPHQDIISQRLSTLYQLSRLEQGIVIVPVT
TLMQRLAPKQYLDANSLIIKKGDKKDLHQLRQELEAGGYRHVDQVMEHGEFSARGAILDL
FPMGSNNPYRLDFFDDEIDEIRLFDPDSQRSSDKINNINLLPAHEFPTDQAGINLFRSQY
RELFSGTIDKESVYHKVSGGILPAGIEYYLPLFFQQTSTLCDYLSAQTLVMLYGDIDQAI
SQHWTDIEYRYEERRYDRSRPLVPPQQLFLGSEELYSALKPFDRIKLSAASEQVQAQANE
TKAGTVSFDVRELPDLSVNHKLKQPFEQLDRFIAATDTPDKILFVAESQGRRESVLELLI
RDNIKPQLVESIEDFINSDIKLGITVNALTTGFIFQSSESSKHGPEAIALVTESELLGDR
VRQTRRRNKQQDVQADALFKNLAELSIGQAVVHFEHGIGRYMGLQTLETGGITTEFLMLN
YANDAKLYVPVASLHLISRYSGADGDRAPLHKLGTDAWSKAKKKAAEKVRDVAAELLDVY
AKRASSQGYKFSRDKKDYQAFADSFGFEETLDQEQAINAVIGDMLAPTAMDRLVCGDVGF
GKTEVAMRAAFVAVNDSKQVAILVPTTLLAQQHYENFRDRFANWPVTIEVLSRFKSSKEQ
NEVISRVESGQVDILIGTHKLLQNTISYKDLGLLIVDEEHRFGVKQKEKIKQLRSNVDIL
TLTATPIPRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRQRDDALIRESVLREILRGGQV
YFLHNNVDTIEKTASDLQALLPEAKIITAHGQMRERELERIMSDFYHQRFNLLVCTTIIE
TGIDIPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLEA
IASLEDLGAGFTLATHDLEIRGAGELLGEDQSGQMSQIGFSLYMEMLDQAVEALKEGKQP
TLNQVTSSQTEIDLRLPALLPEDYIFDVSIRLSLYKRIASCKNKNQLDEIQVELIDRFGL
LPQATKNLIQIAKLRLKAQKIGIARLEAGPAGGAIEFADDTKVDPMFIIGLIQQQPAIYK
MEGANKLKFKHPTEDSKARFDLVINMVNDLAKH
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaacaagcaatattttcgagccggttatcgccaaacgccgcggcgatcttgcc
gataaaaaagtatggagcaacttagtcggcagcagcagcgcgctggccatttaccatggc
gcgaaaaatgcggacgcaccggtattgctggtcacttatgatacgccgtcggcattacgc
ctggagcaggaattgctcagtttaaataccgaccagcgcctggccgtgtgtctgtttccc
gactgggaaaccttaccctacgatagtttttctccccaccaggatattatttcccagcgc
ctgtccaccctgtaccaactgtcccggctggagcaaggcatagtgatagtccccgtcacc
accttgatgcagcgcctggcgccaaaacaatatctggatgccaacagcctgataattaaa
aaaggcgataaaaaagatctgcaccagctcaggcaggagcttgaagccggcggctaccgc
catgtcgaccaggtaatggaacacggcgaattttctgcccgcggcgctatcctggattta
ttccccatgggcagcaacaacccgtaccggctggatttttttgacgatgaaatcgacgaa
atccgcctgttcgatcccgacagccagcgctccagcgataagatcaacaacataaacctg
ttgccggcccatgagtttcccaccgaccaggcgggcattaacctgtttcgcagccaatac
cgtgaactctttagcggcaccatagataaagagtccgtttaccataaggtcagcggcggc
atactgccggcaggcatagaatattacctgccgctgtttttccagcaaaccagcaccttg
tgcgattatttatcggcgcaaaccctggtgatgctttatggcgacatcgaccaggcaatt
agccagcactggacggacatagaataccgctatgaagaaagacgttacgacagatcccgc
cctttggtgccgccgcagcaattattcctgggcagtgaagagctttacagcgcccttaaa
cctttcgaccgcatcaagctaagcgccgccagcgaacaagtacaggcgcaggcaaacgag
accaaagcaggcaccgtcagctttgatgtcagggagctgccggatttaagcgtaaatcac
aagttaaagcagccgtttgagcagctggaccgctttatcgccgccacagataccccggat
aaaatcttgtttgttgccgaaagccagggacgacgggaaagcgtactggaattactgatc
cgggataatatcaagccgcaactggtggaaagcatagaagactttatcaacagcgatatc
aaactggggatcacggtgaatgccctgaccacgggctttattttccaaagcagcgagagc
agcaaacacgggcccgaggccatcgccctggtcaccgaatcggaattgctcggcgaccgg
gtcaggcaaacccggcgccgcaacaaacagcaggatgtccaggcggacgccctgtttaaa
aacctggcggaactctccatcggccaggcggtggtgcattttgaacacggcatcggccgt
tatatggggctgcagaccctggaaaccggcggcataaccacggaatttttgatgctcaat
tacgccaacgacgccaaattatacgtgcccgtggcttcgctgcacctgatcagccgttat
tccggagccgacggcgatcgcgcgccgctgcacaaattaggcacagacgcctggagtaaa
gccaagaaaaaggcggcagaaaaagtccgcgacgtggcggcggaattgctggatgtgtac
gccaaacgcgccagcagccaggggtataaatttagccgggacaaaaaagactaccaggcc
tttgccgacagtttcggctttgaagaaaccctggaccaggagcaggccatcaatgccgtg
atcggcgacatgctcgcccccaccgccatggaccgcctggtatgcggcgatgtcggcttc
ggtaaaaccgaagtggcgatgcgggcggcttttgttgccgtcaatgactccaagcaggtg
gcgatcctggtgcccactactttgctggcccagcaacattatgaaaacttccgcgaccgt
ttcgccaactggccggtaaccatagaagtcttatcccgctttaagtcctccaaagagcaa
aacgaggtgatttcccgggtcgagtccggccaggtagatattttgatcggcacccataag
ctgctgcaaaataccatcagctataaagacttaggtttacttatcgtcgacgaggagcac
aggttcggggtcaaacaaaaagagaagatcaaacagctgcgcagcaatgtcgatatcctg
accctgaccgctacccctatccccagaaccctgaacatggccatgggcggcatgcgcgac
ttatccattatcgccactccgccggcaaaacgcctggcggtaaaaacctttgtccgccag
cgggacgacgccctgatccgcgaatctgtgcttcgggaaatcctgcgcggcggccaggtg
tacttcctgcacaacaatgtcgataccatagaaaaaaccgcctcagatctgcaagcctta
ctgccggaagcaaaaatcattaccgcccacgggcagatgcgcgagcgcgagctggaacgc
atcatgagcgatttttaccaccaaaggtttaacctgctggtctgtaccaccataatcgaa
accggtatcgatattcccagcgccaataccattatcatggacagggcggatcatttggga
ctggcgcaactgcaccagctcaggggccgggtcggccgctcccaccaccaggcctatgcc
tatctgctgaccccccatgaaaagcgcatgaccaaagacgcgaaaaaacgcctcgaagcc
atcgcctcgctggaagatctcggcgccggtttcaccctggccacccatgatctggaaatc
cgcggcgccggggaattgttaggggaagaccaaagcggccagatgagccagataggcttt
agtctctatatggaaatgctggatcaggcggtggaagcgttaaaagaaggcaaacaaccg
accctgaaccaggtcacctcctcgcaaacggaaatcgatttacgcctgcccgccctgctg
ccggaagattatatttttgatgtcagcatccggttgagcctttataagcgtatcgccagc
tgtaaaaataaaaaccagctcgatgaaatccaggtagagctgatcgaccgtttcggccta
ttgccccaggccaccaaaaacctgatacaaatcgccaaattacgcctgaaggcacaaaaa
ataggtattgcccgcctcgaagccggacctgcgggaggtgcgattgaatttgccgatgat
actaaggttgatcctatgtttattatcggcctgatccagcagcaaccggcgatttataaa
atggaaggcgccaataagcttaaatttaaacacccgaccgaggacagcaaggctcgcttt
gatctggtcatcaatatggtcaatgacctggccaagcactga
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