Thalassomonas viridans: SG34_019235
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Entry
SG34_019235 CDS
T08831
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tvd
Thalassomonas viridans
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvd03032
]
SG34_019235 (topA)
03400 DNA repair and recombination proteins [BR:
tvd03400
]
SG34_019235 (topA)
Enzymes [BR:
tvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SG34_019235 (topA)
DNA replication proteins [BR:
tvd03032
]
Prokaryotic type
DNA Topoisomerases
SG34_019235 (topA)
DNA repair and recombination proteins [BR:
tvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SG34_019235 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WDE03512
UniProt:
A0AAE9Z1I8
LinkDB
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Position
complement(4339713..4342400)
Genome browser
AA seq
895 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTGSTGKKVAAKSPAEVRKMSPE
AKAKYKQKRDKQALVNRMGIDPEKDWQADYQILPGKEKVVNELKKLADTADTVYLATDLD
REGEAIAWHLKEIIGGSDDKFKRVVFNEITENAIQQAFSTPGELSMPGVNAQQARRFLDR
VVGFMVSPLLWKKIARGLSAGRVQSVAVKLVVEREREIKAFVPKEFWEINADTNTNDGQA
LNLDVTHEDGKAFKPGNESEAKQALAVLESAKYSVSNREDRPSKSTPSAPFITSTLQQAA
STRLGFGVKRTMGLAQRLYEAGHITYMRTDSTNLSKDAVDMCRNYISENFGENYLPEKPK
TYGSKAGAQEAHEAIRPSNVKLESAFMSDMEADAKKLYDLIWRQFVACQMTAARYDVSTL
TVSAGKFDLKAKGRVMKFDGWTRVHPQLSKGDDTHLPDIAVGEVLTLDKLTPSQHFTKPV
ARYGEASLVKELEKRSIGRPSTYASIISTIQDRGYVRLDKKRFYAEKMGEIVTDSLSQSF
EKLMSFDFTANMEQELDEIAEGQIDWKAVLNEFYKNFTEQLSLADKPVDEGGMPSNEPVT
TDIDCPTCGRKMGIRTASTGVFLGCTGYALPPKERCTTTMNLTSGEEAVSVLAEDQETEA
LRAMHRCPKCQTAMDSYLIDETRKLHVCGNNPVCDGYELEQGSFKIKGYDGPVLECDRCG
SQMELKSGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPVSLPELPCEQSDAHFVLRDG
AAGIFMAASTFPRSRETRAPKVAELKRFRDRISSKFYYLADAPAEDPEGNLAVVRFSRKT
KEQYVMTEVEGKATGWVAKYIDGKWVEEQTKKKAAPKKKAAAKAKPKAKATAAKA
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatctctggtaattgtcgagtcaccagccaaagcaaagacaattaacaaatac
ctaggtaaagacttcgtcgtgaagtcaagtgtcggtcatgtccgtgatttgccgaccggt
agcacaggtaaaaaggttgctgcaaaatctcccgccgaagtgcgtaaaatgtcgccggaa
gcaaaagcgaaatataagcaaaaacgtgacaagcaggccctggttaaccgcatgggcata
gaccctgaaaaagactggcaggcggattatcagatcctgcccggcaaggaaaaagtggtt
aatgagctgaaaaagcttgccgataccgcagacactgtttatctcgcaaccgatttggat
cgcgagggagaagcgatagcctggcacttaaaagaaatcatcggcggcagtgacgacaag
ttcaagcgggtggtgtttaacgaaattaccgaaaatgccattcagcaagcgttttcaaca
ccgggtgaactcagcatgcccggcgtcaacgcccagcaggcaagacgttttctggaccgg
gtggttggctttatggtcagtccgctgttgtggaaaaaaattgcccgtggtttatccgca
ggccgggtacagtcggttgcggttaagctggtggtggagcgcgagcgggaaatcaaggct
tttgtgcctaaagagttctgggaaattaatgccgataccaacacaaatgacggccaggcc
cttaaccttgatgttacccatgaagacggcaaagcctttaagccaggcaacgaaagcgaa
gccaaacaggcgctggcagtgcttgaaagcgccaaatacagtgtcagcaaccgcgaagac
cggccttcgaaaagcacgccttcggcaccttttattacctccactttgcaacaagcggcc
agcacccgtttaggttttggcgttaaacgtaccatgggactggcgcagcgtttgtatgaa
gccggccatattacctatatgcgtaccgactcgaccaacctgagtaaagatgccgttgat
atgtgccgtaactatatcagcgaaaatttcggtgagaactatttgccggaaaaaccgaaa
acctatggcagcaaggcaggggcccaggaagcgcacgaggcgatccggccatcgaatgtc
aagctggagtcggcctttatgtctgatatggaagccgatgcgaaaaaactttatgacctt
atctggcgtcagttcgttgcctgtcagatgacggctgcccgctatgatgtcagcaccttg
accgtcagcgccggtaagtttgacctaaaagccaaaggccgggtaatgaaatttgacggc
tggacccgggttcatccgcagctttccaaaggtgacgatacccatctgccggatattgct
gtcggtgaggtcttaaccctggataagctgaccccgtcccagcactttaccaagcctgtg
gcgcgctatggtgaagcttccctggttaaagaattggaaaaacgctctatcggccgtccg
tcgacttatgcttctattatttccacgattcaggatcgcggttatgtgcgcctggacaaa
aagcgtttttatgcggaaaaaatgggagaaattgtcaccgacagtttatcgcaaagtttt
gaaaagctgatgagctttgattttaccgccaatatggagcaggagctggatgaaatcgcc
gaaggccagattgactggaaggcggtattaaacgagttctacaaaaactttaccgagcag
ctcagcctggcagacaagcctgtggatgaaggcggaatgcccagcaacgagccggttact
acagatatcgactgtcctacctgcggccgcaagatgggcatcagaaccgcttctaccggg
gtattcttaggctgtaccggttatgccctgccgccgaaagagcgctgtaccaccaccatg
aacctgacttcgggtgaagaagcggtgagcgtgctggcggaagatcaggaaaccgaagca
ctgcgtgccatgcaccgttgtcctaagtgtcagacggcgatggacagttacttgatcgat
gaaacccgtaaattgcacgtgtgcggtaacaaccctgtgtgtgacggttatgaacttgag
cagggcagctttaagattaagggttatgacggccctgtgctggaatgtgatcgctgtggc
tcgcaaatggaattgaagtcgggacgttttggcaaatatttcggctgtaccaatgaggaa
tgtaaaaacacccgtaagctgctgaaaaacggtgaagctgcgccgccaaaagaagatccg
gtgtctttgcctgaactgccttgcgagcagtcggatgcccactttgtcctcagggacggc
gctgccgggatctttatggctgccagtactttcccgcggtcgagagaaacccgggcacct
aaagtggcagagttgaaaaggttcagggatcgcatctcttccaagttttattacctggcg
gatgcgccggcggaagatcccgaaggcaatttagcggtagtgcgctttagccgtaaaacc
aaagagcaatatgtgatgacagaagtcgaaggtaaggcgaccggctgggtagccaaatac
atcgacggaaaatgggtggaagagcagacgaaaaagaaagcggcgccgaaaaagaaagcc
gcagccaaggcgaaacccaaagctaaggctactgccgccaaagcataa
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