Thalassomonas viridans: SG34_024785
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Entry
SG34_024785 CDS
T08831
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG34_024785 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvd03019
]
SG34_024785 (rnr)
03016 Transfer RNA biogenesis [BR:
tvd03016
]
SG34_024785 (rnr)
Enzymes [BR:
tvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SG34_024785 (rnr)
Messenger RNA biogenesis [BR:
tvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SG34_024785 (rnr)
Transfer RNA biogenesis [BR:
tvd03016
]
Prokaryotic type
tRNA degradation factors
SG34_024785 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WDE04516
UniProt:
A0AAF0C8M1
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All DBs
Position
complement(5604107..5606548)
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AA seq
813 aa
AA seq
DB search
MTHKDPFSKREAEKYENPVASRELLLSMIEKASTPYTFKALCKALNYHQDEQQIGLKRRL
RAMENSGQLFFNKFKQYVLAPKDSVLTGKVIGHRDGYGFFAPDSGGKDYFISSHEMQRVF
HGDIVEAILLERLDKKGRKEVRILDVVQPRKAGIVGRFFVEHKIACVVPDDARIKQDILI
CPDEKHGARHGQMVVVEIIQRPTKRSNAVGKVVEVLGEHMAPGMEIEIALREHDLPHQWS
QAVLDEVEPLPEEVDDKAKAGRIDLRELPLVTIDGEDARDFDDAVYCEKKKSGGWRLWVA
IADVSYYVRPGSALDDEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMT
VSAKGKLSGSKFYPALMRSHARFTYTKVAAILDGDKELRGQYSDLVPDLESLHQMYHALT
EARNNRGAIAFESDESRFIFNAQRKIEAVEAVVRNDAHKIIEECMILANVATAKFVEKHQ
MPGLFRVHDKPSEDKYKNFVTYLAELGIEVPAREQPEPADYSAILEKVEGRPDQELIQTM
LLRSMKQAVYQSDNVGHFGLALGSYAHFTSPIRRYPDLVIHRVIKAILQGQKDDPVNIGC
YSYPPEAVIELGEHCSMTERRADDATRDVSDWLKCEFMQDHVGDIFTGVIATVTNFGLFV
RLSELHIEGLVHITSLGHDYYHYDDIRMSLTGENSGAKYHVGDVLEVRVAAVNLDEKKID
LVLSGENAVLSRAKPLRGRRSGKGAGKTKGKGSAKAQAGAEFVPAKEKAKPENKPGKKKA
AGKKAKVKKEKSKVTKRKARKQRPGKNARKQAK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
gtgacacataaagatccattttctaaacgggaagctgaaaaatacgaaaatccggtagca
agcagagaactcttgctgtctatgattgaaaaagcatccaccccctatacctttaaagcc
ctgtgtaaagccctcaattaccatcaagatgaacagcagatcggtcttaagcgccgtctg
cgggcgatggaaaacagcggccagttattttttaataaattcaagcaatacgtgcttgca
ccaaaagacagtgtgctaaccggcaaagttatcggccacagggacgggtatggttttttt
gcccccgacagcggcggcaaagactactttatttcctcccatgaaatgcaaagggttttt
cacggcgatatcgttgaagctatcttgctggagcgcctggataagaagggccgtaaggaa
gtgcgtattctggatgtggtgcagccgagaaaagccgggattgtcggtcgtttttttgtc
gagcataaaattgcctgcgtggtgccggacgacgcccgcatcaagcaggatatcctgatc
tgcccggatgaaaaacacggtgcccgtcatggccagatggtggtggtggaaattatccag
cgcccgacaaaaaggagcaatgccgtcggcaaggtggtggaagtgttaggggaacatatg
gcgccgggcatggaaattgaaattgccctgcgcgagcatgatctgccgcaccagtggtcc
caggcggtgctcgatgaagttgagcctttgccggaagaagtggacgacaaggccaaagcc
gggcgtatcgatctgcgtgagttgcctttggtcactatcgacggcgaggatgcccgggat
tttgacgatgccgtatattgcgaaaagaaaaaaagcggcggctggcgcctgtgggtggcc
attgccgatgtcagttattatgtgcgcccgggctcggcgttagacgacgaggccatcagc
cggggcaactctgtgtatttccccagccaggtgatccctatgctgccggaaaaactctcc
aacggcctatgctccctcaatccggatgtcgaccgcctgtgtatggtgtgtgaaatgacc
gtcagcgccaagggcaagttatccggcagcaagttttatcccgccctgatgcgctcccat
gcccgttttacctataccaaggtagcggcgatactcgacggcgacaaagagctgcgcggg
caatactcagatttggtgccggatctggaaagcctgcaccagatgtatcacgccctgacc
gaggcccgtaataaccgcggcgccatcgcctttgaaagcgacgagtccaggtttatcttt
aatgcacagcgcaaaatagaagcggtggaagccgtggtgcgcaacgatgcccacaagatc
atcgaagaatgtatgatcctggcgaatgtggccaccgccaagtttgttgaaaaacaccag
atgcccggcctattccgggtgcatgacaaacccagcgaagataagtataaaaactttgtc
acctacctggccgaattgggcattgaagtacccgccagggagcagccggagccggcggat
tattcggctatccttgaaaaagtcgagggcaggccggatcaggagctgatccagaccatg
ttgctgcgttcgatgaaacaggcggtttatcaaagtgacaatgtcggccatttcggtctg
gcattaggctcctacgcccattttacctcgccgatacgccgttatccggatctggttatc
caccgggtgatcaaagcgatattgcagggacagaaagacgatccggttaatatcggctgc
tacagttacccgcctgaagctgtgattgaactcggcgagcactgctcgatgacagagcgg
cgcgccgatgacgccacccgggatgtcagtgactggcttaaatgtgagtttatgcaggat
catgtcggggatatcttcaccggggtgatagcaaccgtgactaactttggcttgtttgta
cgcttaagcgaactgcatattgagggcctggtgcatattacttccctggggcatgactat
tatcattacgacgatatccgcatgtccctcaccggagagaatagcggcgctaaataccat
gtcggcgatgtgcttgaggtcagggttgccgccgttaacctggatgagaaaaaaatcgac
ctggtgctctccggcgagaatgccgtgctgagccgggcgaaaccgctgcgtggcaggcgt
tcaggcaaaggggccgggaaaaccaagggcaaaggcagtgctaaggcacaagccggtgct
gaattcgttccggcaaaagaaaaagctaagccagaaaataagccgggaaaaaagaaggca
gccggtaaaaaagccaaggtaaaaaaagaaaagtccaaggtgaccaagcgcaaggcgaga
aaacaaaggcccgggaaaaatgcccgcaagcaagcgaagtaa
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