Thalassomonas viridans: SG34_026885
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Entry
SG34_026885 CDS
T08831
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
tvd
Thalassomonas viridans
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvd03021
]
SG34_026885 (rapA)
Transcription machinery [BR:
tvd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SG34_026885 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
NAPRTase
Motif
Other DBs
NCBI-ProteinID:
WDE04891
UniProt:
A0AAF0C8Z0
LinkDB
All DBs
Position
6073200..6076103
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AA seq
967 aa
AA seq
DB search
MPFHPGQRWISDSESDQGLGTVTQVEQRFVTIIFTATGDVRKYASDNAPLTRVIFNVGDS
IPSHEGWKLTVESIEESNHLFIYHGVRQDTGEAASLKEMMIDHFIKFNKPHDRLLNSQVD
RLDWFRLRKDCLQHQFQQQQSPLMGLSGGRVSLIPHQLHIADEVGSRFAPRVLLADEVGL
GKTIEAGLIIHQQLVSGRAQRILIIVPESLVHQWLVEMLRRFNLKFSIFDHERCVESGEE
NPFSSEQLVLVNLGFITDNPQWYEALIAEEWDLMVVDEAHHLNWQQDNASIEYQCIEQLA
QTIPGVLLLTATPDQLGHESHFARLRLLDPDRFFDYQKFIDEESHYTEVAEAANVILSGE
ALSKGHQETLTALFKETDISAQLAVLADGGHEKQQQVRDELLGQLLDRHGTGRILFRNSR
NTIKGFPERRLIPAPLAMPEQYQALLNDFMLSDCAENLMQLSQAKYIFTPELLYTLDNPA
GNWVDFDPRVEYLINLLQSLNKEKVLVICASAQTAIDLEAALRVKQGSRAAVFHEGLSIF
ERDRAAAYFAQDEDSAQLLLCSEIGSEGRNFQFAHHMVLFDLPSNPDLLEQRIGRLDRIG
QTQTIKLHTPYFEDSAQSLLFQWYHQALNAFEHTCITGRVVFERYGNELLQLALSGQWQS
DAAAAIIDSSHQQHLNIKAELESGRDKLLEINSSGQGKAQELVEDIARLDRQISLPQFMF
QVWDVYGVQQDDKSDNAIALNPTEHMLSANFPCLPEDGTTVTFNRETALAHEDYQLLTWD
HPMVRGVLDLVLADETGNASIGLLQNPALPVGTFFLECLFTVEATAPAQLQLGRYLPTTP
IRVLVDKNGNDLADKVSEEVLDKQLSPVKKQMALQLIKALKSQFSPLVEKAESHAHTRVA
GIQEKAMEVMHKTLDEELERLTALAAINPSVRQEELDFIKLQLAELTTYINKAQLKFEAV
RMIVVTH
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccatttcaccccggtcaacgttggataagtgacagtgaatccgatcagggattaggt
acagttacccaggttgaacaaagatttgtcaccattatctttaccgccaccggtgatgtc
cgtaaatacgccagcgacaacgcccccctgacccgggtgatctttaatgtcggcgacagc
attcccagccacgaaggctggaaactgacggtagaatccatagaggaaagcaatcatctt
ttcatttaccatggcgtgcgccaggacacgggggaagcggcttccctgaaagaaatgatg
attgaccactttatcaagtttaacaagccccatgacaggctgttaaacagccaggtggac
cgcctcgactggttccggttacgcaaagactgtttgcagcaccaattccagcaacagcaa
tcccccctgatgggcctgagcggcggccgggtcagcctgatcccccaccagctgcatatt
gccgatgaagtcggcagccgctttgccccccgggtattgctggcagatgaagtcggcctg
gggaaaaccatagaagccggtttgatcatacaccagcagctggtcagcggccgggcgcag
cgtatcctgatcatcgtgcccgagtccctggtgcaccagtggctggtggaaatgctgcgc
cgctttaacctcaaattcagcatttttgaccatgagcgttgcgtggaaagcggcgaagaa
aatcccttcagctcggagcagctggtgctggtgaacctgggttttattaccgacaaccca
caatggtatgaagccctgatcgccgaggagtgggacctgatggtggtggatgaagcccac
caccttaactggcagcaggacaatgccagcatagaataccagtgcatagaacagctggcg
caaaccatccccggcgtactcctgctcaccgccaccccggatcagctgggccatgaaagc
cattttgcccgcttaaggctgctcgaccccgatcgcttttttgactaccagaaattcatc
gatgaagaaagtcactacaccgaagtggcggaagccgccaatgtcattctttccggcgaa
gccctgtcgaaggggcatcaggaaacattaaccgccttattcaaagaaaccgatatcagc
gcacaactggcggtgctggcggacggcggccacgaaaagcagcagcaggtccgggacgaa
ctgcttggccagttgctggaccgccacggcaccggccgcatcctgttccgcaacagccgc
aacaccatcaagggcttccccgagcgccggctgatcccggcgcctttggccatgccggaa
caataccaggccctgctgaacgactttatgctcagcgactgtgccgagaacctgatgcag
ttatcccaggccaagtatatcttcacccctgagctgttatataccctggacaaccctgcc
ggcaactgggtggactttgatcccagggtggagtacctgatcaacctgctgcagtcgtta
aacaaagaaaaagtcctggtgatttgtgcctcggcgcaaaccgccatcgacctcgaagcg
gccctgagggtgaagcaggggagccgcgccgccgtcttccatgaaggcctgagcattttc
gaacgggaccgcgccgccgcctatttcgcccaggacgaagacagcgcccagctgttatta
tgctcggaaatcggcagtgaaggacgcaacttccagtttgcccaccatatggtactgttt
gacctgccgtccaacccggacctgctggagcagcgcatcggccgcctggaccgtatcggc
cagacgcaaacgataaaactgcacaccccgtatttcgaagactcggcgcaaagcctgctg
ttccagtggtaccaccaggcgctgaatgcgttcgagcatacctgtatcacaggccgggtg
gtgttcgagcgttacggcaacgaattattgcagctggccctgtcggggcaatggcagtcg
gacgcggcagcggccattatcgacagcagccaccagcagcatttaaacatcaaggcggag
ctggaatccggccgggataagctgctggaaatcaactcttccggtcagggcaaggcccag
gagctggtggaggacattgcccgtctcgaccggcagatctccctgccgcagtttatgttc
caggtctgggacgtatacggcgtccagcaggacgacaaatccgacaatgccatcgccctg
aacccgacagagcatatgctcagcgccaacttcccctgcctgccggaagacggcactacc
gtcacctttaaccgggaaaccgccctggcccatgaagactaccagctgctgacctgggat
caccctatggtgcgcggcgtgctggacctggtgctggcggatgaaaccggcaatgccagc
ataggtttattgcaaaacccggcgctgccggtaggcaccttcttcctggaatgcctgttc
acggtagaagccaccgcccctgcccagctgcaactgggccgctacctgcccactacccct
atccgggtgctggtggacaaaaacggcaatgaccttgccgacaaggtctcggaagaagta
ctggacaagcagctgtctccggtgaaaaaacaaatggcgctgcaactgatcaaggcatta
aagtcccagttttcccctctggtggaaaaagccgagtcccatgcccacacccgggtggcc
ggcatccaggaaaaagccatggaagtgatgcacaaaacactggacgaagagctggaacgc
ctcaccgcgctggcggccatcaacccgagcgtacgccaggaagagctggattttatcaaa
ctacagctggcggaactgaccacctatatcaacaaggcgcagcttaagtttgaagcggtg
cgcatgatagtggtaactcactaa
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