Thalassomonas viridans: SG34_029270
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Entry
SG34_029270 CDS
T08831
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG34_029270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvd03019
]
SG34_029270
Enzymes [BR:
tvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG34_029270
Messenger RNA biogenesis [BR:
tvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG34_029270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDE05331
UniProt:
A0AAE9Z1Z6
LinkDB
All DBs
Position
complement(6664573..6665826)
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AA seq
417 aa
AA seq
DB search
MGFSSLGLASGLVQALAGQGYQEPTPVQQAAIPMILSGKDIMAGAQTGTGKTAAFALPIL
QLLSKNKTSRDESAGEENIPSPGALVLTPTRELAQQVHASFEKYGSGLALDSRLAYGGVS
INPQVEAFKAGIDILVATPGRLLDHLAKGSLTLSQLQFLVFDEADRMLDMGFIDDIKRIL
KRLPEQRQTMLFSATFDAATVGLSKKLLNQPEMIQVDEANTAAAQVEQIVYTVDPERKRE
LISHVIGSKNWQQVLIFTRSRQSADLLAAEMSKDGVKTQAIHGDKSQGAREKALAEFKSG
QTRALVATDVASRGLDIRQLQYVINYELPFNPEDYVHRIGRSGRAGNAGLAISLVSTEEE
HLLAEIEAVLGQALPQQWLPGYEPDLTREIKTGKKMTRSGQKRRAKQRAGGGRNRRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgggtttttcttctttaggtctggcatccggattagtgcaagcgcttgccgggcaaggg
tatcaggagccgacacctgtgcagcaggcggctattcctatgattctttccggtaaggat
attatggcgggtgcgcaaaccggcacggggaaaaccgctgcctttgccttgccgatattg
cagttgctcagtaaaaataaaacctcccgggatgaaagtgccggagaagaaaacattcct
tcacccggtgcgttagtacttactccaacccgggagttggcacagcaggtccatgcaagt
tttgaaaagtacggcagcgggctggcgcttgatagccgcctggcttatggcggtgtcagc
atcaatccccaggtggaagcctttaaagccggtattgatatcctggtggcaaccccggga
cgtttgctggatcacctggctaaaggttctcttaccctgagtcagctgcaatttctggtg
ttcgatgaagcggaccgcatgctggatatgggttttatcgacgacattaagcgtatcctc
aaacgcctgccggagcagcgccagaccatgctcttttcggcaacctttgatgctgccacc
gtcggtttgagtaaaaagctgctgaaccagccggaaatgatccaagtggatgaagccaat
accgctgcggcccaggttgaacagattgtttataccgtagatcccgaaagaaaaagggaa
ttgatctcccatgtaataggttcgaaaaactggcagcaggtattgatctttacccgcagc
cggcaaagcgccgatctgctggcggcggaaatgagcaaagacggtgtgaaaacccaggcc
attcacggcgataaatcccagggagccagggaaaaggctctggcggaatttaaatccggg
caaacccgggcgctggtggccacagatgttgcttcgcgcggcctggacatccggcaattg
caatatgtgatcaactatgaattgccgtttaatccggaagactatgtccaccgtatcggc
cgcagtggccgtgccggtaatgccgggctggcgatctccctggtatcgacggaagaagaa
catttgctggcggagatcgaggcggtgttgggccaggcgttgccacagcaatggttgccc
ggctacgagccggatctgacccgggaaatcaaaaccggtaaaaaaatgacccgctccgga
caaaaacgccgggcgaaacaaagagcgggtggtggccgtaaccgcaggcgttag
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